TABLE 1.
E values from pairwise BLASTP alignments between representative protein sequencesa
| Sequence |
E value for:
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Eco RecJ | MJ0977 | MJ0831 | AF0075 | MJ1198 | AF00291 | MJ0988 | MJ1633 | MJ0608 Ppx1 | Sce PPX1 | |
| Eco RecJ | >10 | 0.018 | >10 | 0.26 | 3.3 | >10 | >10 | >10 | >10 | |
| MJ0977 | 6 × 10−26 | 9 × 10−15 | >10 | 3.3 | 0.61 | 0.27 | >10 | >10 | ||
| MJ0831 | 6 × 10−11 | >10 | 6.3 | 6.3 | >10 | >10 | >10 | |||
| AF0075 | 0.55 | >10 | >10 | >10 | >10 | >10 | ||||
| MJ1198 | >10 | >10 | >10 | >10 | >10 | |||||
| AF0291 | >10 | >10 | >10 | >10 | ||||||
| MJ0988 | 10−18 | 0.20 | >10 | |||||||
| MJ1633 | 0.31 | 0.35 | ||||||||
| MJ0608 Ppx1 | 2 × 10−7 | |||||||||
| Sce PPX1 | ||||||||||
a
Alignments were performed with the gapped BLASTP program (1), the BLOSUM62 matrix, and gap penalties of 11 (open) and 1 (per residue extension) with a lambda ratio of 0.85. Eco, E. coli sequence; Sce, S. cerevisiae sequence. MJ and AF prefixes indicate proteins encoded by the archaea M. jannaschii and A. fulgidus, respectively.