Table 2.

QTLs identified for DOF, F, H and M traits in G. hirsutum background.

Trait	Environment	QTL name	Marker	Effect	PV%	PFDR	Direction
DOF	2012 Athens	DOFATH12.1	S9_12681571	4.70	10.7	0.0004	Acala Maxxa
		DOFATH12.2	S4_7481466	4.77	12.0	0.0010	Acala Maxxa
	2013 Athens	DOFATH13.1	S8_92715964	8.18	5.7	0.0003	Acala Maxxa
		DOFATH13.2	S21_51723985	7.98	5.9	0.0003	Acala Maxxa
F	2013 Athens	FATH13.1	S9_12681571	0.54	7.8	0.0005	Acala Maxxa
		FATH13.2	S24_54165927	0.41	5.0	0.0007	Acala Maxxa
		FATH13.3	S3_88953389	0.58	5.1	0.0007	Acala Maxxa
		FATH13.4	S5_74202281	−0.39	5.8	0.0018	Pima S6
	2013 Tifton	FTIF13.1	S17_38905284	−0.34	6.1	0.0005	Pima S6
		FTIF13.2	S23_60939933	0.38	6.6	0.0019	Acala Maxxa
		FTIF13.3	S1_40742962	0.66	6.4	0.0019	Acala Maxxa
		FTIF13.4	S25_2143717	0.45	5.9	0.0057	Acala Maxxa
H	2012 Athens	HATH12.1	S8_731569	10.98	6.0	0.0050	Acala Maxxa
		HATH12.2	S4_52414819	6.28	8.9	0.0098	Acala Maxxa
	2013 Athens	HATH13.1	S14_49757420	−8.41	4.8	0.0023	Pima S6
		HATH13.2	S22_45552038	13.95	6.0	0.0023	Acala Maxxa
		HATH13.3	S21_11295817	−18.49	6.2	0.0026	Pima S6
		HATH13.4	S4_58350283	10.15	6.3	0.0036	Acala Maxxa
	2013 Tifton	HTIF13.1	S22_45607321	12.16	7.3	0.0006	Acala Maxxa
		HTIF13.2	S7_71964151	18.41	9.1	0.0011	Acala Maxxa
M	2013 Athens	MATH13.1	S22_32060974	−0.74	5.2	0.0004	Pima S6
		MATH13.2	S13_70435467	0.93	7.5	0.0029	Acala Maxxa
		MATH13.3	S12_120523	1.37	7.2	0.0029	Acala Maxxa
		MATH13.4	S19_25158319	1.48	9.0	0.0029	Acala Maxxa
		MATH13.5	S9_53292025	−1.15	7.8	0.0090	Pima S6
	2013 Tifton	MTIF13.1	S23_42682833	0.40	7.1	0.0010	Acala Maxxa
		MTIF13.2	S9_44724131	0.53	5.7	0.0010	Acala Maxxa