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. 2022 Jun 7;190(1):459–479. doi: 10.1093/plphys/kiac272

Figure 6.

Figure 6

Differential PAL in response to drought stress. A, Violin plot showing median PAL in ND, D5, and D7. Dashed horizontal lines presenting PAL of 80 nt. B, Box plot showing 10 GO terms with the longest PAL (orange) and 10 GO terms with the shortest PAL (blue) in ND. The box limits represent 25th and 75th percentiles; center line, 50th percentiles; and whiskers, 10th and 90th percentiles. Dashed horizontal lines presenting PAL of 80 nt. C, Box plot showing gene function groups presenting the greatest increase (left) and decrease in PAL (right) in D5 versus ND (top) and D7 versus ND (bottom). A, represents “kinase activity”; B, “nucleotide-excision repair”; C, “protein deubiquitination”; D, “protein metabolic process”; E, “G protein-coupled receptor signaling pathway”; F, “response to hormone”; G, “N-acetyltransferase activity”; H, “isoprenoid biosynthetic process”; I, “protein serine/threonine kinase activity”; J, “nucleobase-containing compound metabolic process”; K, “metal ion transmembrane transporter activity”; L, “large ribosomal subunit”; M, “protein phosphatase type 2A regulator activity”; N, “protein phosphatase type 2A complex”; O represents “microtubule-based movement”; P, “microtubule motor activity”; Q, “kinesin complex”. Dashed horizontal lines presenting PAL of 80 nt. D, Box plot showing PAL distribution for fully spliced (no_IR) and IR transcripts. The dash lines representing the median PAL in no_IR and IR transcripts. E and F, Scatter plots showing differential PAL for D5 versus ND (E) and D7 versus ND (F). G and H, Box plots showing drought stress-induced longer PAL (G) and shorter PAL (H) for Potri.008G102500 and Potri.013G034800, respectively.