Table 1.
M. abscessus bacterial strains carrying MabR prophage.
| Accession no.a | MabR prophage b , c | Coordinates d , e | Additional prophageb | Coordinatesd | Origin f | Subspecies | Strain | |
|---|---|---|---|---|---|---|---|---|
| FSAT01 | GCA_900131665.1 | prophiFSAT01-1 | C1 2,104,368–2,172,096 | – | – | United Kingdom | abscessus | 280 |
| FSIL01 | GCA_900136245.1 | prophiFSIL01-1 | C6 162,543–229,039 | prophiFSIL01-2 (MabA1) | C2 491,511–553,312 | United Kingdom | abscessus | 1,009 |
| FSGY01 | GCA_900135415.1 | prophiFSIL01-1 | C4 326,208–259,712 | prophiFSIL01-2 (MabA1) | C2 209,626–147,825 | United Kingdom | abscessus | 62 |
| FSGZ01 | GCA_900135455.1 | prophiFSIL01-1 | C7 228,809–162,313 | prophiFSIL01-2 (MabA1) | C2 491,649–553,450 | United Kingdom | abscessus | 63 |
| FSHA01 | GCA_900135465.1 | prophiFSIL01-1 | C6 228,812–162,316 | prophiFSIL01-2 (MabA1) | C2 209,313–147,512 | United Kingdom | abscessus | 64 |
| FSHB01 | GCA_900135495.1 | prophiFSIL01-1 | C2 229,051–162,555 | prophiFSIL01-2 (MabA1) | C2 563,712–501,911 | United Kingdom | abscessus | 314 |
| FSHC01 | GCA_900135485.1 | prophiFSIL01-1 | C6 125,119–191,615 | prophiFSIL01-2 (MabA1) | C3 209,298–147,497 | United Kingdom | abscessus | 66 |
| FSHD01 | GCA_900135515.1 | prophiFSIL01-1 | C7 125,118–191,614 | prophiFSIL01-2 (MabA1) | C3 491,671–553,472 | United Kingdom | abscessus | 67 |
| FSHE01 | GCA_900135475.1 | prophiFSIL01-1 | C7 125,120–191,616 | prophiFSIL01-2 (MabA1) | C2 209,310–147,509 | United Kingdom | abscessus | 68 |
| FSHF01 | GCA_900135505.1 | prophiFSIL01-1 | C1 826,179–162,313 | prophiFSIL01-2 (MabA1) | C1 491,510–553,311 | United Kingdom | abscessus | 69 |
| FSHG01 | GCA_900135535.1 | prophiFSIL01-1 | C6 228,810–162,314 | prophiFSIL01-2 (MabA1) | C2 479,152–417,351 | United Kingdom | abscessus | 70 |
| FSHI01 | GCA_900135525.1 | prophiFSIL01-1 | C7 228,802–162,306 | prophiFSIL01-2 (MabA1) | C3 209,315–147,514 | United Kingdom | abscessus | 71 |
| FSIG01 | GCA_900136185.1 | prophiFSIL01-1 | C5 228,798–162,543 | prophiFSIL01-2 (MabA1) | C3 491,467–553,268 | United Kingdom | abscessus | 991 |
| FSIH01 | GCA_900136155.1 | prophiFSIL01-1 | C1 1,678,669–1,745,165 | prophiFSIL01-2 (MabA1) | C2 707,577–769,378 | United Kingdom | abscessus | 993 |
| FSIJ01 | GCA_900136115.1 | prophiFSIL01-1 | C6 125,125–191,621 | prophiFSIL01-2 (MabA1) | C3 209,291–147,490 | United Kingdom | abscessus | 996 |
| FSIQ01 | GCA_900136355.1 | prophiFSIL01-1 | C6 228,795–162,299 | prophiFSIL01-2 (MabA1) | C2 491,560–553,361 | United Kingdom | abscessus | 1,019 |
| FSKF01 | GCA_900137275.1 | prophiFSIL01-1 | C5 125,178–191,674 | prophiFSIL01-2 (MabA1) | C2 491,625–553,426 | United Kingdom | abscessus | 1,024 |
| FVMH01 | GCA_900136085.1 | prophiFSIL01-1 | C6 228,779–162,283 | prophiFSIL01-2 (MabA1) | C1 1,082,839–1,144,640 | United Kingdom | abscessus | 994 |
| FVPC01 | GCA_900137305.1 | prophiFSIL01-1 | C1 544,352–477,856 | prophiFSIL01-2 (MabA1) | C1 879,057–817,256 | United Kingdom | abscessus | 1,026 |
| FSQJ01 | GCA_900141335.1 | prophiFSQJ01-1 | C10 102,082–169,883 | prophiFSQJ01-3 (MabD) | C12 50,449–101,334 | United States | abscessus | 712 |
| FSMS01 | GCA_900139245.1 | prophiFSQJ01-1 | C13 99,951–167,702 | prophiFSMS01-2 (MabD), | C7 85,005–135,096 | United States | abscessus | 699 |
| prophiFSMS01-3 (MabG) | C7 156,631–209,932 | |||||||
| FSOD01 | GCA_900140065.1 | prophiFSQJ01-1 | C13 85,252–17,501 | – | – | United States | abscessus | 686 |
| FVXT01 | GCA_900141255.1 | prophiFSQJ01-1 | C10 93,905–26,154 | prophiFSMS01-2 (MabD) | C7 84,991–135,082 | United States | abscessus | 698 |
| prophiFSMS01-3 (MabG) | C7 156,617–209,918 | |||||||
| FVLO01 | GCA_900135885.1 | prophiFVLQ01-1 | C1 163,540–230,227 | prophiFVLQ01-2 (MabD), | C15 73,430–126,907 | Australia | bolletii | 874 |
| prophiFVLQ01-3 (MabC) | C5 363,193–311,358 | |||||||
| FVLQ01 | GCA_900135895.1 | prophiFVLQ01-1 | C2 360,992–427,679 | prophiFVLQ01-2 (MabD), | C4 73,988–127,465 | Australia | bolletii | 875 |
| prophiFVLQ01-3 (MabC) | C7 510–52,345 |
a
GenBank assembly accession numbers.
b
Prophages are named after the first genome where they were first isolated, identical prophage in other genomes use the same name.
c
MabR prophage in the genomes FSGY01, FSGZ01, FSHE01, FSHG01, FVHM01, FSMS01, and FVXT01 have single-nucleotide differences with their representative prophage genome.
d
The contig number (C1, C2, etc.) is shown followed by the coordinates within that contig.
e
MabR prophage coordinates in representative host genomes (FSAT01, FSIL01, FSQJ01, and FVLQ01) are ordered from attL to attR.
f
All genome samples were isolated from the respiratory system of diseased hosts in the country indicated.