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. 2022 Sep 1;12:14902. doi: 10.1038/s41598-022-19065-z

Figure 3.

Figure 3

RNA-Seq revealed that 7-KC regulated the expression of transcripts related to inflammation, cholesterol biosynthesis and ER stress. RNA-Seq was performed using RNAs extracted from peritoneal macrophages treated with vehicle, 10 µM cholesterol or 7-KC for 24 h. N = 3. (A) Transcriptomic heatmap for the 3 groups. The heatmap was visualized using iDEP software (version 0.94) (http://bioinformatics.sdstate.edu/idep/). (B) and (C) Network analysis (B) and top 30 differentially overexpressed mRNAs (C) in macrophages treated with 7-KC compared to those treated with cholesterol. Transcripts were categorized as inflammation- (red), cholesterol/steroid metabolism- (green), and ER stress-associated genes (blue). The network analysis was visualized using STRING software (version 11.5) (https://string-db.org). RNA-Seq, RNA sequencing; Veh, vehicle; Chol, cholesterol; 7-KC, 7-ketocholesterol; ER, endoplasmic reticulum; FC, fold change.