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. 2022 Aug 18;25(9):104955. doi: 10.1016/j.isci.2022.104955
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

Analyzed dataset Shin et al., 2011 GSE28891
Analyzed dataset Cullen et al., 2010 GSE20498
Analyzed dataset Raven et al., 2017 GSE98034
Analyzed dataset Fu et al., 2019 GSE105019
Analyzed dataset Yang et al., 2017 GSE90047
Analyzed dataset Ceulemans et al., 2017 GSE102683
Analyzed dataset Demarez et al., 2018 GSE99890
Analyzed dataset Schaub et al., 2018 GSE108315
Analyzed dataset Tarlow et al., 2014 GSE55552
Analyzed dataset Dianat et al., 2014 GSE51791
Analyzed dataset Halpern et al., 2017 GSE84498
Analyzed dataset Not Available GSE64292

Software and algorithms

RACIPE (Random Circuit Perturbation) Huang et al., 2017 https://github.com/simonhb1990/RACIPE-1.0
PyDSTool Clewley, 2012 https://github.com/robclewley/pydstool
AUCell Aibar et al., 2017 https://github.com/aertslab/AUCell
Single Sample Gene Set Enrichment Analysis (ssGSEA) Subramanian et al., 2005 https://www.gsea-msigdb.org/
Analysis codes This paper https://github.com/sarthak-sahoo-0710/2021_liver_cell_plasticity