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. 2022 Sep 1;23:184. doi: 10.1186/s13059-022-02738-3

Fig. 4.

Fig. 4

Embedding matrices reveal separation of features and samples and enrichment in certain metabolic pathways. a UMAP plots of sample embedding matrix W reveal some separation between batches and cancer types, as well as b separation between tumor and normal samples. c Feature embeddings separate peptides and lipids from other metabolites. d Certain pathways are enriched in certain embedding dimensions, though analysis is limited by statistical power