TABLE 4.
IVS family
|
% Nucleotide identity for (family, strain, gene):
|
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Q
|
R
|
M
|
|||||||||
Strain | rrl gene | SA5473
|
SA5474
|
SA5564
|
LT2
|
||||||
B | G | B | C | E | G | C | E | G | rrlHb | ||
P. rettgeri SA5473 | B | 100 | 78 | 78 | 77 | 78 | 78 | 78 | 78 | 66 | |
P. rettgeri SA5473 | G | 100 | 78 | 78 | 77 | 78 | 78 | 78 | 78 | 66 | |
P. vulgaris SA5474 | B | 78 | 78 | 100 | 99 | 100 | 100 | 100 | 100 | 69 | |
P. vulgaris SA5474 | C | 78 | 78 | 100 | 99 | 100 | 100 | 100 | 100 | 69 | |
P. vulgaris SA5474 | E | 77 | 77 | 99 | 99 | 99 | 99 | 99 | 99 | 68 | |
P. vulgaris SA5474 | G | 78 | 78 | 100 | 100 | 99 | 100 | 100 | 100 | 69 | |
P. vulgaris SA5564 | C | 78 | 78 | 100 | 100 | 99 | 100 | 100 | 100 | 69 | |
P. vulgaris SA5564 | E | 78 | 78 | 100 | 100 | 99 | 100 | 100 | 100 | 69 | |
P. vulgaris SA5564 | G | 78 | 78 | 100 | 100 | 99 | 100 | 100 | 100 | 69 | |
Salmonella serovar Typhimurium LT2 | rrlHb | 66 | 66 | 69 | 69 | 68 | 69 | 69 | 69 | 69 |
Nucleotide identity comparisons were done by using DNASIS version 2.0 for the Macintosh. A family consists of IVS sequences with ≥90% nucleotide identity. rrl genes have been named for the I-CeuI fragments from which they were isolated, except in the case of Salmonella serovar Typhimurium, where the gene designation is given. Boxes are described in Table 3, footnote a.
The nucleotide sequences are all from this report except for Salmonella LT2 rrlH (GenBank accession no. U49926).