Fig. 10.

Imputation accuracy (ER²) in the real data cohort, when considering different subsets of individuals. Imputation accuracy (ER²) when imputing from the combined data (genotyped with the HD array) as well as the six subsets (i.e., samples collected across the four African countries, all African samples, African taurine samples, European taurine samples, all indicine samples, and Asian indicine samples), reflecting the variety of breeds/populations represented in the HD combined data. Imputation to WGS level was carried out using the Global Reference Panel. The results from the masked analysis using the target set that was created by retaining the WGS genotypes that overlapped with the variants of the HD array are also reported