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. 2022 Sep 4;54:58. doi: 10.1186/s12711-022-00751-5

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Imputation accuracy (dosage R²) when imputing from bovine array variants to WGS level, using the Global Reference Panel (i.e., 289 individuals). The target sets were created by retaining the WGS genotypes that overlapped with the variants of each of the 23 available bovine genotyping arrays from the Global Reference Panel (i.e., Global target set, with 289 individuals). Results are presented only for 16 arrays (i.e., those retaining more than 10,000 variants after QC), for which imputation was successful. Dosage R² is only calculated for the variants that are not on the array