Table 1.
Study Subjects | Key findings | Ecological changes in the flora | Strains with increased abundance | Strains with reduced abundance | |||
---|---|---|---|---|---|---|---|
1 | Microbial profiles for terminal ileum biopsy specimens obtained from patients with recent-onset tumor necrosis factor antagonist-naive AS (Costello et al., 2015) | Microbial communities in AS differ significantly from those in healthy control subjects, driven by a higher abundance of 5 families of bacteria | The microbial composition was demonstrated to correlate with disease status | Lachnospiraceae, Ruminococcaceae, Rikenellaceae, Porphyromonadaceae, Bacteroidaceae |
Veillonellaceae, Prevotellaceae |
||
2 | Stool specimens from 150 AS patients (Klingberg et al., 2019) | There is a distinct fecal microbiota profile, which is associated with the fecal calprotectin levels. | 87% of patients with ecological disorders |
Proteobacteria, Enterobacteriaceae, Bacilli, Streptococcus spp., Actinobacteria |
Bacteroides, Lachnospiraceae | ||
3 | Chinese AS patient cohort (Wen et al., 2017) | Reduced abundance of melanin-producing Prevotella, Prevotella spp. and Anaphyllobacter spp. | Ecological disorders | Bacillus spp., Prevotella, melanogaster, Prevotella spp. | |||
4 | Stool samples from 22 patients with AS (Li et al., 2019) | Increased abundance of Bacillus variegatus and reduced Bacillus mimicus | Lower biodiversity ratios; significant reduction in the diversity of intestinal fungi |
Ascomycota, Cysticercus |
Basidiomycota, Stretchers |
||
5 | Stool samples from two AS cohorts (Breban et al., 2017) | Ruminal cocci may be a potential marker of disease activity | A unique ecological disorder | align="left"> Rumenococcus | |||
6 | 27 patients with SpA (Tito et al., 2017) | Dialister may be a potential microbial marker of disease activity | Significant differences in the microbiological composition of the gut in patients with microscopic intestinal inflammation | Dialister | |||
7 | Macrogenome sequencing of stool samples from patients with IBD (Hall et al., 2017) | Significant increase in the abundance of parthenogenic anaerobic bacteria tolerant to oxidative stress; dramatic but transient rumen cocci blooms coinciding with increased disease activity | Low diversity |
Rumenococcus, Parthenogenic anaerobic bacteria |
|||
8 | A total of 174 mucus samples from 43 UC and 26 CD patients (Nishino et al., 2018) | Significant increase in the Metaplasma phylum and significant decrease in the phylum Firmicutes and Bacteroidetes; CD and UC have different microbial community structures associated with mucous membranes. | Significant reduction in alpha diversity | Phylum Metaplasma |
Phylum Firmicutes, Bacteroidetes | ||
9 | Stool analysis of patients with IBD (Alam et al., 2020) | The changed bacterial groups are those that do not co-exist well with the common intestinal commensal bacteria | Low microbiome diversity | Coriobacteriaceae, Prevotellaceae, Burkholderiaceae, Veillonellaceae, Streptococcaceae, Pseudomonadaceae, Acidaminococcaceae | |||
10 | Recent-onset, DMARD-naive PsA (Scher et al., 2015) | Low relative abundance of Akkermansia and Ruminoccocus hb as a characteristic of the PsA gut microbiota | Reduced diversity of the gut microbiota due to the low relative abundance of several taxa. |
Akkermansia, Ruminoccocus |
|||
11 | 52 psoriasis patients (Codoner et al., 2018) | Type 2 patients have a higher frequency of bacterial translocation and more frequent inflammatory states | Faecalibacterium | Bacteriodes |