Table 1.

Selected differentially expressed plant immunity and defense-related genes responding to Chitinophaga sp. strain R-73072 inoculation in Lithospermum officinale.

Gene	Name	Homolog	log2FC**	FDR**
Receptor-like kinases/proteins (RLKs/RLPs)
Leryth_008018	SOBIR1	At2g31880	1.63/1.60	3.24E-05/2.92E-31
Leryth_009940	SOBIR1	At2g31880	1.33/1.31	3.37E-05/4.79E-31
Leryth_008055	CRK2	At1g70520	1.21/1.19	5.29E-05/9.44E-27
Leryth_014565	LYK4	At2g23770	1.09/1.07	8.51E-05/ 6.25E-21
Leryth_015096	LYK4	At2g23770	2.46/2.42	5.58E-05/ 3.68E-27
Leryth_014483	LYK5	At2g33580	1.14/1.12	4.01E-05/3.68E-27
Leryth_023675	LYK5	At2g33580	3.59/3.48	0.00053/1.76E-15
Leryth_014150	RLK7	At1g09970	4.51/4.29	0.0018/ 2.11E-10
Leryth_004923	PBL2	At1g14370	3.73/3.66	0.00084/3.45E-20
Leryth_005473	PBL19	At5g47070	1.33/1.27	0.001/1.78E-09
Leryth_015108	RLCK176	Os05g0110900	1.56/1.55	1.95E-05/1.10E-50
Defense-related genes
Leryth_006253	prePIP1	At4g28460	5.07/4.67	0.009/6.49E-07
Leryth_019906	PR1		1.24/1.16	0.003/ 1.85E-06
Leryth_021873	PR1		−2.34/−2.16	0.002/ 1.57E-05
Leryth_010259	FMO1	At1g19250	3.46/3.07	0.016/0.00019
Leryth_021258	CHI5	At3g54420	5.41/5.36	0.00014/2.16E-31
Leryth_021259	CHI5	At3g54420	3.89/3.87	3.24E-05/9.73E-65
SA metabolism and signaling
Leryth_006114	SARD1	At1g73805	3.72/3.68	8.15E-05/5.58E-48
Leryth_009394	SARD1	At1g73805	3.42/3.36	0.0002/3.03E-28
Leryth_003919	WRKY70	Solyc03g095770	3.78/3.62	0.0014/3.47E-11
Leryth_007513	WRKY70	Solyc03g095770	3.39/3.33	0.0002/5.17E-26
Leryth_011094	WRKY70	Solyc03g095770	3.36/3.30	0.0004/1.13E-24
Leryth_024007	WRKY70	Solyc03g095770	2.42/2.37	0.0001/9.78E-32

^*log₂FC, log₂fold change, values above and below are from edgeR and DEseq2, respectively.

^**FDR, false discovery rate, values above and below are from edgeR and DEseq2, respectively.