TABLE 1.
Genetic identificationa of biofilm-defective mutants of S. gordonii Challis
Mutant | Allele | Locus | % of level of wild-type biofilm formationb | Genetic function | Putative role in biofilm | Nucleotide sequence at Tn916 junctionc | Accession no. | Reference |
---|---|---|---|---|---|---|---|---|
1 | 8F9 | comD | 61.4 | Histidine kinase | Quorum sensing | TTAATTTTATTGTAA | U80077 | 42 |
2 | 1C1 | PBP 2B gene | 9.0 | Peptidoglycan biosynthesis | Osmoregulation? | AAGATTTTTATACTA | AF207585 | This study |
3 | 11E5L | PBP 5 gene | 44.3 | Peptidoglycan biosynthesis | Osmoregulation? | ATTATTTTTTAAAGA | AF207578 | This study |
11E5U | ATPase gene | Cation transport | Osmoregulation? | CTATATTTTTAAAGA | AF207579 | This study | ||
4 | 11B4 | glmM | 55.5 | Peptidoglycan biosynthesis | Osmoregulation? | GTTATTTTTTTATTA | AF207577 | This study |
5 | 15B3 | bacA | 12.6 | Peptidoglycan biosynthesis | Osmoregulation? | TACTTTTATACTTTA | AF207587 | This study |
6 | 9F8 | abpA | 16.2 | α-Amylase binding | Adhesion | CTCCTTTTTTATGTA | AF035817 | 51 |
7 | 29E5 | appC | 24.9 | Oligopeptide transport | Nutrient sensing? | AGTTTTTTTTATGTA | AF207584 | This study |
8 | 4B3 | mutT | 17.1 | DNA replication | Unknown | TTTATTATTAATTTA | AF207581 | This study |
9 | 13A12 | ytmP | 14.6 | Unknown | Unknown | TTATTTTTTTTATTA | AF207592 | This study |
10 | 8A11 | No match | 35.3 | Unknown | Unknown | GTATTTTTTACAAAA | AF207586 | This study |
11 | 6C12 | No match | 28.2 | Unknown | Unknown | ATAATTTTTTATTTA | AF207591 | This study |
12 | 14H6 | No match | 26.1 | Unknown | Unknown | GTTCTTTTTATTCAA | AF207582 | This study |
13 | 8B8 | No match | 33.2 | Unknown | Unknown | TGATTTTTTTGAATA | AF207583 | This study |
14 | 12E11 | No match | 18.5 | Unknown | Unknown | CTATATTTTTAAAGA | AF207576 | This study |
15 | 8G2 | No match | 21.6 | Unknown | Unknown | CGAATTTTAATTTTA | AF207580 | This study |
16 | 29F1 | No match | 43.3 | Unknown | Unknown | GTTCTTTTTAATGTA | AF207590 | This study |
17 | 18D10 | No match | 22.1 | Unknown | Unknown | GCTATTATTATACCA | AF207588 | This study |
18 | 11G1 | No match | 32.1 | Unknown | Unknown | TCGATTTTTTTATTA | AF207589 | This study |
Based on DNA homologies with DNA sequences in GenBank.
Wild-type biofilm formation was considered to be 100%.
Fifteen nucleotides upstream of the chromosomal DNA of the Tn916 insertion.