Table 2.
Nanopore MinION sequencing results
| Sample ID | Pathogen | MinION readsb Total (Predominant %) |
|---|---|---|
| C3 | Streptococcus pneumoniae | 184 (94) |
| C4 | Streptococcus suis | 187 (87) |
| C7 | Streptococcus pneumoniae | 187 (94) |
| C8 | Streptococcus pneumoniae | 182 (96) |
| C10 | Streptococcus suis | 178 (94) |
| C11 | Streptococcus suis | 166 (97) |
| C13 | Enterococcus hirae | 182 (57) |
| C17 | Streptococcus pneumoniae | 164 (91) |
| C23 | Neisseria gonorrhoeae | 219 (98) |
| C25a | Streptococcus suis | 175 (94) |
| C26 | Streptococcus suis | 190 (94) |
| C27 | Klebsiella pneumoniae | 173 (83) |
| C30 | Aeromonas jandaei | 178 (75) |
| Positive control | Acinetobacter baumannii | 156 (94) |
aSample was run in a separate sequencing run (not part of the single pool)
b200 reads/sample were considered for analysis