Table 3.
Association of eQTLs for the eight genes in Table 1 with BE, EAC or BE/EAC risk in Bonn GWAS.
| Locus | Gene | #eQTLs | Trait | #snps in Bonn |
#snps (P<0.05)a |
MinPb | Bonn_Pc | Hochberg_P |
|---|---|---|---|---|---|---|---|---|
| 5p15.33 | EXOC3 | 28 | BE/EA | 26 | 12 | 1.69×10−7 | 1.85×10−5 | 1.48×10−4 |
| 6q14.1 | SENP6 | 51 | BE/EA | 48 | 3 | 3.55×10−4 | 5.01×10−2 | 0.189 |
| 11q13.4 | KRTAP5-8 | 23 | EA | 20 | 2 | 8.02×10−4 | 0.162 | 0.324 |
| 12q13.11 | ZNF641 | 4 | BE/EA | 4 | 3 | 4.26×10−3 | 3.78×10−3 | 0.026 |
| 14q32.31 | HSP90AA1 | 94 | BE | 89 | 14 | 0.012 | 8.28×10−3 | 0.049 |
| 16q23.1 | CFDP1 | 5 | BE/EA | 5 | 1 | 0.028 | 0.053 | 0.189 |
| 16q23.1 | CHST5 | 21 | BE | 20 | 2 | 9.81×10−3 | 0.063 | 0.189 |
| 16q23.1 | BCAR1 | 335 | BE | 328 | 11 | 4.63×10−3 | 0.464 | 0.464 |
Number of SNPs with univariate p-value< 0.05 in Bonn data.
Minimum univariate p-value in Bonn data.
Validation SKAT p-value in Bonn data.