Antibodies |
|
|
Anti-Flag Affinity Gel |
Sigma-Aldrich |
Cat# A2220, RRID:AB_10063035 |
Anti-V5 Agarose Affinity Gel |
Sigma-Aldrich |
Cat# A7345, RRID:AB_10062721 |
Anti-GAPDH |
Cell Signaling Technology |
Cat# 3683, RRID:AB_1642205 |
Anti-STK25 |
Abcam |
Cat# ab157188, RRID:AB_2725788 |
Anti-Flag |
Sigma-Aldrich |
Cat# F3165, RRID:AB_259529 |
Anti-GM130 |
Cell Signaling Technology |
Cat# 12480, RRID:AB_2797933 |
Anti-PRKAR1A |
Abcam |
Cat# ab139695, RRID:AB_2893184 |
Anti-pS77 PRKAR1A |
Abcam |
Cat#ab139682, RRID:AB_2904566 |
Anti-pS83 PRKAR1A |
Abcam |
Cat#ab154851, RRID:AB_2904567 |
Anti-PRKAR2A |
Protein Tech |
Cat# 10142-2-AP, RRID:AB_2922955 |
Anti-TnI |
Cell Signaling |
Cat# 4002, RRID:AB_2206278 |
Anti-TnI-pS23/S24 |
Cell Signaling |
Cat# 4004, RRID:AB_2206275 |
Anti-Phospholamban |
Cell Signaling Technology |
Cat# 14562, RRID:AB_2798511 |
Anti-Phospholamban-pS16/T17 |
Cell Signaling Technology |
Cat# 8496, RRID:AB_10949102 |
Anti-Ryanodine Receptor 2 |
Abcam |
Cat#ab196355, RRID:AB_2904568 |
Anti-Ryanodine Receptor 2-pS2808 |
Abcam |
Cat# ab59225, RRID:AB_946327 |
Anti-V5 |
Sigma-Aldrich |
Cat# V8137, RRID:AB_261889 |
Anti-PKA Catalytic subunit |
Abcam |
Cat# ab26322, RRID:AB_2170049 |
Anti-mouse IgG (HRP conjugated) |
Cell Signaling Technology |
Cat# 7076, RRID:AB_330924 |
Anti-rabbit IgG (HRP conjugated) |
Cell Signaling Technology |
Cat# 7074, RRID:AB_2099233 |
Anti-CD172a/b |
Biolegend |
Cat# 323805; RRID:AB_830704 |
Anti-CD90 |
Invitrogen |
11-0909-42, RRID:AB_10668828 |
Anti-TNNT2 |
BD Biosciences |
Cat# 565744, RRID:AB_2739341 |
Biological samples |
|
|
Human myocardial samples (IRB#AAAR0055) |
National Disease Research Interchange (https://ndriresource.org/ats) |
N/A |
Chemicals, peptides, and recombinant proteins |
|
|
Y-27632 dihydrochloride |
Tocris |
Cat# 1254 |
CHIR 99021 |
Tocris |
Cat# 4423 |
Wnt-C59 |
Tocris |
Cat# 5148 |
Forskolin |
Sigma-Aldrich |
Cat# F6886 |
Lipofectamine 3000 |
invitrogen |
Cat# L3000015 |
Fast SYBR Green mixture |
Life Technologies |
Cat# 4385612 |
Recombinant protein STK25 |
ORIGENE |
Cat# TP303215 |
Recombinant protein PRKAR1A |
Abnova |
Cat# H00005573_P01 |
In vitro kinase buffer |
Cell Signaling |
Cat# 9802 |
Critical commercial assays |
|
|
PKA activity kit |
Invitrogen |
Cat# EIAPKA |
10-plex TMT kit |
Navarrete-Perea et al. (2018)
|
PMID: 29734811 |
SmartSeq Ultra Low V4 kit |
Clontech/Takara |
R400752 |
Nextara XT Library Prep Kit |
Illumina |
FC-131-1024 |
RNeasy Mini kit |
Qiagen |
Cat#74004 |
On-column DNAse digestion |
Qiagen |
Cat# 79254 |
Superscriptâ„¢ III First-Strand Synthesis SuperMix |
Invitrogen |
Cat# 18080400 |
Real Time Glo cell viability assay |
Promega |
Cat# G9712 |
Deposited data |
|
|
Sequencing of WT versus STK25KO cardiomyocytes |
This paper |
NCBI GEO: GSE195514
|
Proteomic data |
This paper |
PRIDE ProteomeXchange: PXD031367 |
Experimental models: Cell lines |
|
|
HEK293T |
ATCC |
Cat# CRL-3216, RRID:CVCL_0063 |
HiPSC (WTC cell line) |
Material Transfer Agreements from Bruce Conklin, Gladstone Institute |
N/A |
Experimental models: Organisms/strains |
|
|
C57BL/6J mice (AABC1503) |
The Jackson Laboratory |
Strain #000664 |
Oligonucleotides |
|
|
On-TargetPlus siRNA targeting STK25 |
Horizon Discovery |
Cat# L-004873-00-0050 |
ON-TARGETplus non-targeting pool |
Horizon Discovery |
Cat# D-001810-10-50 |
MISSION esiRNA targeting PRKAR1A |
Sigma-Aldrich |
Cat# EHU071341 |
Fwd Primer for STK25: GCTCCTACCTAAAGAGCACCA |
IDT |
N/A |
Rev Primer for STK25: TGGCAATGTATGTCTCCTCCAG |
IDT |
N/A |
Fwd Primer for GAPDH: GGACTCATGACCACAGTCCATG |
IDT |
N/A |
Rev Primer for GAPDH: CAGGGATGATGTTCTGGAGAGC |
IDT |
N/A |
Recombinant DNA |
|
|
CRISPR-Cas9 gRNA for STK25 knockout in iPSC |
ORIGENE |
Cat# KN203215G |
CRISPR-Cas9 gRNA for STK25 knockout in mice |
Synthego |
Cat# sgRNA-stk25-7367, Cat# sgRNA-stk25-td10150 |
Flag-Empty Vector control |
GeneCopoeia |
Cat# EX-NEG-M46 |
Flag-WT-STK25 vector |
GeneCopoeia |
Cat# EX-M0142-M46 |
Flag-K49R/T147A-STK25 vector |
Vector Builder |
N/A |
V5-PRKAR1A |
Vector Builder |
VB200124-1141aes |
V5-S77A/S83A-PRKAR1A |
Vector Builder |
VB200124-1126jtp |
V5-S77E/S83E-PRKAR1A |
Vector Builder |
VB200124-1127pst |
Software and algorithms |
|
|
Real-Time Analysis Illumina |
Illumina |
https://www.illumina.com/informatics/sequencing-data-analysis.html
|
Bcl2fastq 2.19 |
Illumina |
https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
|
Kallisto 0.44.0 |
Bray et al. (2016)
|
https://pachterlab.github.io/kallisto/
|
DESeq2 1.28.1 |
Love et al. (2014)
|
https://bioconductor.org/packages/release/bioc/html/DESeq2.html
|
GSEA 4.10.0 |
Subramanian et al. (2005)
|
https://www.gsea-msigdb.org/gsea/index.jsp
|