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. 2022 Sep 6;22:234. doi: 10.1186/s12911-022-01977-5

Table 5.

A Entity types. B Relation types. Dataset overview

Train Validate Test
Left Right Left Right Left Right
A
BIOLOGICAL PROCESS 181 825 61 301 70 270 1,708
CELL 60 25 15 12 16 12 140
COMPOUND 769 225 232 75 266 72 1,639
DNA 4 1 4 9
ENZYME 67 34 28 8 20 17 174
GENE 1,017 598 347 180 328 185 2,655
HORMONE 25 10 6 3 7 4 55
MOLECULAR FUNCTION 59 71 24 26 21 20 221
PHENOTYPE 494 1053 168 355 160 368 2,598
PROTEIN 241 142 84 33 84 46 630
RNA 91 33 34 13 33 13 217
VIRUS 10 1 3 2 16
3,018 3,018 1,006 1,006 1,007 1,007 10,062
Train Validate Test
B
Directed Link 484 174 175 833
Negative Cause 403 141 156 700
Negative Decrease 208 82 74 364
Negative Increase 145 52 48 245
Positive Cause 662 219 206 1087
Positive Decrease 89 18 26 133
Positive Increase 172 54 47 273
Undirected Link 855 266 275 1396
3018 1006 1007 5031