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. 2022 Sep 7;12(39):25528–25548. doi: 10.1039/d2ra03326g

The main software used in computational modelling of biochemical networks.

Software name Web access Ref.
Silicon cell https://www.siliconcell.net 119
Systems Biology Markup Language (SBML) https://sbml.org 120
JWS Online https://jjj.bio.vu.nl 121 and 122
COPASI https://copasi.org 123
CellNetAnalyzer https://www2.mpi-magdeburg.mpg.de 124
BioNetS https://x.amath.unc.edu/BioNetS 125
Fluxer https://fluxer.umbc.edu 126