Table 3.
Summary of genes annotated with KO numbers associated with each protein in the bacterial DNA replication complex
| EC No. | KO No. | Name | Gene ID | Localization (transit pep.) | Origin | Synechococcus sp. WH5701 Proteins | Gene ID P. chromatophora | |
|---|---|---|---|---|---|---|---|---|
| Nuc. and chrom. encoded | 2.7.7.7 | K02342 | DNA polymerase III subunit epsilon | MSTRG.13717.1.p1 | Nuclear (crTP) | Uncertain | EAQ74371 | m.66968, m125241 |
| MSTRG.8071.1.p1 | Nuclear (mtTP) | Bacterial | ||||||
| APP88013.1_204 | Chromatophore | PCH_246209_247117 | ||||||
| Chromatophore encoded | 3.6.4.12 | K02314 | Replicative DNA helicase | APP88154.1_345 | Chromatophore | EAQ75589 | PCH_420124_421542 | |
| 2.7.7.101 | K02316 | DNA primase | APP88027.1_218 | Chromatophore | EAQ75091 | PCH_261592_263637 | ||
| 2.7.7.7 | K02337 | DNA polymerase III subunit alpha | APP88023.1_214 | Chromatophore | EAQ75099 | PCH_256107_259634 | ||
| 2.7.7.7 | K02338 | DNA polymerase III subunit beta | APP88184.1_375 | Chromatophore | EAQ75723 | PCH_460012_461196 | ||
| 2.7.7.7 | K02340 | DNA polymerase III subunit delta | APP88227.1_418 | Chromatophore | EAQ75796 | PCH_510667_511635 | ||
| 2.7.7.7 | K02341 | DNA polymerase III subunit delta' | APP88084.1_275 | Chromatophore | EAQ75332 | PCH_333304_334296 | ||
| 2.7.7.7 | K02343 | DNA polymerase III subunit gamma/tau | APP88218.1_409 | Chromatophore | EAQ75781 | PCH_497417_499171 | ||
| – | K03111 | Single-strand DNA-binding protein | APP88236.1_427 | Chromatophore | EAQ75861 | PCH_521937_522311 | ||
| Nuclear encoded | 6.5.1.2 | K01972 | DNA ligase | MSTRG.15911.1.p1 | Nuclear (crTP) | Eukaryotic | EAQ75604 | m.13705 (crTP) |
| MSTRG.8876.1.p1 | Nuclear (mtTP) | Eukaryotic | m.92521, m.34888, m.39298 | |||||
| MSTRG.7660.1.p1 | Nuclear | Eukaryotic | ||||||
| 2.7.7.7 | K02335 | DNA polymerase I | MSTRG.17738.1.p1 | Nuclear | Eukaryotic | EAQ74696 | m.105893, m.106755 (truncated), m.25805, m.133252, m.8010 (truncated), m.41193, m.183634 (truncated), m.52383 (+150aa) | |
| MSTRG.27742.1.p1 | Nuclear (crTP) | Maybe-Bacterial | ||||||
| MSTRG.6340.1.p1 | Nuclear (mtTP) | Eukaryotic | ||||||
| MSTRG.4007.1.p1 | Nuclear | Eukaryotic | ||||||
| MSTRG.13387.1.p1 | Nuclear | Uncertain | ||||||
| 3.1.26.4 | K03469 | RNase HI | MSTRG.11892.1.p1 | Nuclear | Uncertain | EAQ76617 | m.71861 | |
| MSTRG.19480.1.p1a | Nuclear (crTP) | Uncertain | m.147684 (truncated) | |||||
| 3.1.26.4 | K03470 | RNase HII | MSTRG.7053.1.p1a | Nuclear (crTP) | Uncertain | EAQ75396 | m.103917 (truncated), m.150289 (truncated), m.59563 (truncated) |
Chromatophore transit peptides (crTP); mitochondrial transit peptides (mtTP).
a
Partial crTP.