Table 5.
Metagenomic Kp strain-level detection performed using StrainGST in a Kp-spiked fecal microbiome sample.
| Spiked Microbiome |
StrainGST result |
|||||
|---|---|---|---|---|---|---|
| Fecal | Spiked strains (ratio 60:30:10) | Spiked abundance (%) | Strain(s) detected | Strain est. abundance (%) | Total est. abundance (%) | Confidence Score |
| F1 | none | NA | ND | 0 | 0 | NA |
| F2 | ST11, ST23, ST101 | 0.001 | ND | 0 | 0 | NA |
| F3 | ST11, ST23, ST101 | 0.01 | ND | 0 | 0 | NA |
| F4 | ST11, ST23, ST101 | 0.1 | ST11, ST23 | 0.056, 0.028 | 0.084 | 0.245, 0.029 |
| F5 | ST11, ST23, ST101 | 1.0 | ST11, ST23, ST101 | 0.398, 0.171, 0.2 | 0.769 | 0.747, 0.230, 0.082 |
NA = not applicable