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. 2022 Sep 8;20:4984–5000. doi: 10.1016/j.csbj.2022.08.045

Table 4.

Hydrogen bonds between residue in position 343 and Glu333 and trimannose of WT SP-D•Trimannose, Asp325Ala SP-D•Trimannose, Arg343Val SP-D•Trimannose, and DM SP-D•Trimannose at the medial trimannose binding pose.

System Hbond Type Acceptor Donor Occupancy Distance (Å) Angle (degrees)
WT SP-D●Trimannose Glu333-Arg343 Glu333@OE1 Arg343@NE 0.13 2.84 157.52
Glu333@OE2 Arg343@NE 0.12 2.84 156.02
Glu333@OE1 Arg343@NH1 0.25 2.80 158.00
Glu333@OE1 Arg343@NH2 0.04 2.82 156.05
Glu333@OE2 Arg343@NH1 0.27 2.80 157.57
Glu333@OE2 Arg343@NH2 0.05 2.81 156.04
Total 0.87
Glu333-Trimannose Glu333@OE1 Man3@O2 0.05 2.63 162.02
Glu333@OE2 Man3@O2 0.05 2.64 162.18
Glu333@OE1 Man3@O3 0.15 2.67 163.82
Glu333@OE2 Man3@O3 0.18 2.67 163.63
Total 0.43
Asp325Ala SP-D●Trimannose Glu333-Arg343 Glu333@OE1 Arg343@NH1 0.16 2.81 156.57
Glu333@OE2 Arg343@NH1 0.12 2.81 156.60
Glu333@OE1 Arg343@NH2 0.11 2.82 151.39
Glu333@OE2 Arg343@NH2 0.08 2.81 150.55
Glu333@OE1 Arg343@NE 0.05 2.83 153.50
Glu333@OE2 Arg343@NE 0.19 2.83 154.53
total 0.70
Glu333-Trimannose Glu333@OE1 Man3@O2 0.19 2.65 162.57
Glu333@OE2 Man3@O2 0.15 2.68 161.59
Glu333@OE1 Man3@O3 0.09 2.70 163.67
Glu333@OE2 Man3@O3 0.05 2.71 163.73
total 0.49
Arg343Val SP-D●Trimannose Glu333-Val343 No Hydrogen bonds
Glu333-Trimannose Glu333@OE1 Man3@O2 0.04 2.71 156.56
Glu333@OE2 Man3@O2 0.04 2.72 156.49
Glu333@OE1 Man3@O3 0.48 2.67 163.77
Glu333@OE2 Man3@O3 0.43 2.67 163.68
total 1.00
DM SP-D●Trimannose Glu333-Val343 No Hydrogen bonds
Glu333-Trimannose Glu333@OE1 Man3@O2 0.23 2.72 157.01
Glu333@OE2 Man3@O2 0.20 2.73 156.31
Glu333@OE1 Man3@O3 0.41 2.68 164.30
Glu333@OE2 Man3@O3 0.35 2.68 164.24
total 1.19