Table 2.
Illumina® NextSeq 500 RNA sequencing of whole papaya ringspot virus (PRSV) genomes from symptomatic papaya leaf samples collected in Bangladesh and stored in RNAlater®.
| PRSV Isolate | BD1 | BD2 |
|---|---|---|
| Total RNA composite | pap-1 | pap-2 |
| Total reads | 80,648,570 | 61,307,471 |
| Non-virus contigs | 906 | 1,043 |
| Plant virus contigs | 134 | 79 |
| PRSV-specific contigs | 127 | 74 |
| PRSV contig sequence lengths | 200–10,282 nt | 200–3,484 nt |
| Identical matches with reported isolates | 52–100% | 64–100% |
| Total genome length | 10,300 nt | 10,325 nt |
| GenBank accession no. | MH444652.1 | MH397222.1 |
PRSV: Papaya ringspot virus.