Approach 1: Dereplication
at the genomic level |
NCBI |
https://www.ncbi.nlm.nih.gov/ |
BLAST |
https://blast.ncbi.nlm.nih.gov |
AntiSMASH |
https://antismash.secondarymetabolites.org |
AntiSMASH-DB |
https://antismashdb.secondarymetabolites.org |
IMG/ABC |
https://img.jgi.doe.gov/cgi-bin/abc/main.cgi |
MIBiG |
https://mibig.secondarymetabolites.org |
Approach
2: Prioritization
based on microbial taxonomy |
BiG-SCAPE |
https://bigscape-corason.secondarymetabolites.org |
CORASON |
https://github.com/nselem/corason/wiki |
NaPDoS |
https://npdomainseeker.sdsc.edu |
AutoMLST |
https://automlst.ziemertlab.com |
Approach
3: Coevolutionary
principles to guide discovery |
ARTS |
https://arts.ziemertlab.com |
EvoMining |
https://github.com/nselem/EvoMining/wiki |
CO-ED |
http://enzyme-analysis.org |
Approach 4: Retrobiosynthesis to target biosynthetic gene clusters |
Approach 5: Molecular networking
to identify analogues |
GNPS |
https://gnps.ucsd.edu |
Approach
6: Pairing enzymatic
domains with key structural features |
IsoAnalyst |
https://github.com/liningtonlab/isoanalyst |
Approach
7: Paired genome-metabolite
databases for discovery |
NRPminer |
https://github.com/mohimanilab/NRPminer |
PoDP |
https://pairedomicsdata.bioinformatics.nl |
MetaMiner |
https://github.com/mohimanilab/MetaMiner |