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. 2022 Aug 22;94(35):11959–11966. doi: 10.1021/acs.analchem.2c02245

Table 1. List of Resources and Accompanying Website for Each of the Approaches Presented.

Data resource Website
Approach 1: Dereplication at the genomic level
NCBI https://www.ncbi.nlm.nih.gov/
BLAST https://blast.ncbi.nlm.nih.gov
AntiSMASH https://antismash.secondarymetabolites.org
AntiSMASH-DB https://antismashdb.secondarymetabolites.org
IMG/ABC https://img.jgi.doe.gov/cgi-bin/abc/main.cgi
MIBiG https://mibig.secondarymetabolites.org
Approach 2: Prioritization based on microbial taxonomy
BiG-SCAPE https://bigscape-corason.secondarymetabolites.org
CORASON https://github.com/nselem/corason/wiki
NaPDoS https://npdomainseeker.sdsc.edu
AutoMLST https://automlst.ziemertlab.com
Approach 3: Coevolutionary principles to guide discovery
ARTS https://arts.ziemertlab.com
EvoMining https://github.com/nselem/EvoMining/wiki
CO-ED http://enzyme-analysis.org
Approach 4: Retrobiosynthesis to target biosynthetic gene clusters
Approach 5: Molecular networking to identify analogues
GNPS https://gnps.ucsd.edu
Approach 6: Pairing enzymatic domains with key structural features
IsoAnalyst https://github.com/liningtonlab/isoanalyst
Approach 7: Paired genome-metabolite databases for discovery
NRPminer https://github.com/mohimanilab/NRPminer
PoDP https://pairedomicsdata.bioinformatics.nl
MetaMiner https://github.com/mohimanilab/MetaMiner