Table 2. The genomic sequencing results of C. difficile in this study.

	Mean ± STD (n = 49)	Min	Max
Effect reads (%)	91.39 ± 2.02	86	94
ANI	99.65 ± 0.48	99	100
Completeness (%)	98.33 ± 1.21	94	100
Contamination (%)	1.04 ± 0.54	0	2
Genome size (Kbp)	4,065.39 ± 103.80	3,767	4,210
N50 (kbp)	11.00 ± 5.44	3	27
GC (%)	28.86 ± 0.35	28	29
Coverage (%)	98.14 ± 0.68	97	99
SNPs	16,665.84 ± 9,676.51	3,023	36,394
Ins	116.69 ± 59.12	31	234
Del	144.39 ± 75.04	39	275

Note:

ANI, Average Nucleotide Identity.