TABLE 3.

Annotation summary statistics for repeats of the OC reference genome.

Type	Repbase TEs (%)	TE proteins (%)	De novo (%)	Combined TEs (bp)	Combined TEs (%)
DNA elements	1.73	0.74	9.76	157,780,557	11.03
LINE	0.37	0.24	2.19	35,494,175	2.48
SINE	0	0	0.06	922,395	0.06
LTR	16.29	12.32	61.52	897,920,339	62.76
Satellite	0.16	0	0.29	6,373,488	0.45
Simple repeat	0	0	0.02	348,505	0.02
Unknown	0.01	0	3.77	32,645	3.79
Total	18.37	13.3	72.14	54,150,429	74.22