Table 1.
MAG statistics
MAGs recovered from the polystyrene (ps), bran (bran) and starvation control (nf) groups, as well as from the polystyrene faeces (feces_ps) and the bran faeces (feces_b). Taxonomic classifications were carried out with GTDB-Tk (R202) and estimated completeness, estimated contamination and strain heterogeneity were assessed with CheckM
|
MAG ID |
Taxonomy |
Comp |
Cont |
Strain |
Q |
|---|---|---|---|---|---|
|
ps_bin.7 |
Lactococcus garvieae _A ( Firmicutes ; Bacilli ) |
86.11 |
0 |
0 |
86.11 |
|
ps_bin.4 |
Pseudomonas aeruginosa ( Proteobacteria ; Gammaproteobacteria ) |
48.8 |
0.56 |
0 |
46 |
|
ps_bin.3 |
Enterococcus _C sp009933135 ( Firmicutes ; Bacilli ) |
85.26 |
1.62 |
28.57 |
77.16 |
|
nf_max107.003 |
LSJC7 sp005671395 ( Proteobacteria ; Gammaproteobacteria ) |
99.03 |
0.74 |
0 |
95.33 |
|
nf_bin.6 |
Klebsiella _A oxytoca ( Proteobacteria ; Gammaproteobacteria ) |
98.2 |
0.19 |
50 |
97.25 |
|
nf_bin.5 |
Enterococcus _C sp009933135 ( Firmicutes ; Bacilli ) |
74.94 |
2.69 |
50 |
61.49 |
|
nf_bin.1 |
Enterococcus _D ( Firmicutes ; Bacilli ) |
96.62 |
2.51 |
7.69 |
84.07 |
|
feces_ps_gm2_bin_9 |
Klebsiella aerogenes ( Proteobacteria ; Gammaproteobacteria ) |
77.78 |
3.11 |
50 |
62.23 |
|
feces_ps_gm2_bin_7 |
Pseudomonas_E qingdaonensis ( Proteobacteria ; Gammaproteobacteria ) |
97.88 |
0.88 |
28.57 |
93.48 |
|
feces_ps_gm2_bin_6 |
Pseudomonas _E sp001320525 ( Proteobacteria ; Gammaproteobacteria ) |
93.56 |
1.31 |
25 |
87.01 |
|
feces_ps_bin.9 |
90.13 |
1.76 |
0 |
81.33 |
|
|
feces_ps_bin.7 |
91.91 |
0 |
0 |
91.91 |
|
|
feces_ps_bin.6 |
Rhodococcus hoagie ( Actinobacteriota ; Actinomycetia ) |
91.51 |
2.95 |
3.23 |
76.76 |
|
feces_ps_bin.5 |
97.88 |
1.35 |
33.33 |
91.13 |
|
|
feces_ps_bin.3 |
Pseudomonas aeruginosa ( Proteobacteria ; Gammaproteobacteria ) |
85.28 |
1.38 |
11.11 |
78.38 |
|
feces_ps_bin.21 |
Lactococcus garvieae _A ( Firmicutes ; Bacilli ) |
98.09 |
0.2 |
50 |
97.09 |
|
feces_ps_bin.2 |
98.12 |
0.83 |
0 |
93.97 |
|
|
feces_ps_bin.19 |
Enterococcus _C sp009933135 ( Firmicutes ; Bacilli ) |
90.81 |
1.98 |
15.38 |
80.91 |
|
feces_ps_bin.16 |
Brevundimonas ( Proteobacteria ; Alphaprteobacteria) |
83.17 |
0.35 |
50 |
81.42 |
|
feces_ps_bin.15 |
89.53 |
1.94 |
25 |
79.83 |
|
|
feces_ps_bin.14 |
98.42 |
0.56 |
0 |
95.62 |
|
|
feces_ps_bin.12 |
95.4 |
0.46 |
0 |
93.1 |
|
|
feces_ps_bin.10 |
97.86 |
1.46 |
0 |
90.56 |
|
|
feces_ps_bin.1 |
Pediococcus ( Firmicutes ; Bacilli ) |
73.2 |
1.81 |
16.67 |
64.15 |
|
feces_b_bin.9 |
LSJC7 sp005671395 ( Proteobacteria ; Gammaproteobacteria ) |
78.28 |
1.82 |
27.78 |
69.18 |
|
feces_b_bin.8 |
Enterobacter oligotrophicus ( Proteobacteria ; Gammaproteobacteria ) |
62.79 |
0 |
0 |
62.79 |
|
feces_b_bin.5 |
98.16 |
0.15 |
0 |
97.41 |
|
|
feces_b_bin.14 |
Spiroplasma _A ( Firmicutes ; Bacilli ) |
93.96 |
2.01 |
25 |
83.91 |
|
feces_b_bin.12 |
Lactococcus lactis_A ( Firmicutes ; Bacilli ) |
98.3 |
0 |
0 |
98.3 |
|
feces_b_bin.10 |
Enterococcus_B faecalis_A ( Firmicutes ; Bacilli ) |
94.26 |
0.37 |
0 |
92.41 |
|
bran_bin.7 |
LSJC7 ( Proteobacteria ; Gammaproteobacteria ) |
75.68 |
0.58 |
0 |
72.78 |
|
bran_bin.3 |
Enterobacter oligotrophicus ( Proteobacteria ; Gammaproteobacteria ) |
94.86 |
1.48 |
47.37 |
87.46 |
|
bran_bin.2 |
LSJC7 sp005671395 ( Proteobacteria ; Gammaproteobacteria ) |
99.01 |
1.74 |
15 |
90.31 |
|
bran_bin.11 |
Spiroplasma_A ( Firmicutes ; Bacilli ) |
74.61 |
2.01 |
0 |
64.56 |
|
bran_bin.10 |
99.42 |
2.76 |
18.92 |
85.62 |
Estimated completeness (by CheckM)=Comp; estimated contamination (by CheckM)=Cont; estimated strain heterogeneity (by CheckM)=Strain. The genome quality (Q) is calculated as Comp −5 x Cont. The only low-quality MAG (ps_bin.4) included in our analysis is highlighted in italic. Detailed taxonomy strings for each MAG are provided in Table S18. MAG ID colour code: PS and PS faeces (red), starvation control group (green), bran and bran faeces (blue).