Table 2.
List of genes in the chloroplast genomes of the examined Ferula species
| Category | Gene group | Gene name |
|---|---|---|
| Photosynthesis | Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH dehydrogenase | ndhAa, ndhBad, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | petA, petBa, petD, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpFa, atpH, atpI | |
| Large subunit of rubisco | rbcL | |
| Subunits photochlorophyllide reductase | - | |
| Self-replication | Proteins of large ribosomal subunit | rpl14, rpl16a, rpl2ad, rpl20, rpl22, rpl23d, rpl32, rpl33, rpl36 |
| Proteins of small ribosomal subunit | rps11, rps12bd, rps14, rps15, rps16a, rps18, rps19, rps2, rps3, rps4, rps7d, rps8 | |
| Subunits of RNA polymerase | rpoA, rpoB, rpoC1a, rpoC2 | |
| Ribosomal RNAs | rrn16d, rrn23d, rrn4.5d, rrn5d | |
| Transfer RNAs | trnA-UGCad, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCCa, trnH-GUG, trnI-CAUd, trnI-GAUad, trnK-UUUa, trnL-CAAd, trnL-UAAa, trnL-UAG, trnM-CAU, trnN-GUUd, trnP-UGG, trnQ-UUG, trnR-ACGd, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GACd, trnV-UACa, trnW-CCA, trnY-GUA, trnfM-CAU | |
| Other genes | Maturase | matK |
| Protease | clpPb | |
| Envelope membrane protein | cemA | |
| Acetyl-CoA carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Translation initiation factor | infA | |
| other | - | |
| Genes of unknown function | Conserved hypothetical chloroplast ORF | ycf1, cycf1, ycf15d, ycf2d, ycf3b, ycf4 |
Notes: Genea: Gene with one intron
Geneb: Gene with two introns
cGene: Pseudo gene
Gened: Number of copies of multi-copy genes