Table 2.

Log2 abundance change for bacterial order, family, and genera in children with CeD

Level	Organism	Log2 abundance	p value	*p value	Organism	Log2 abundance	p value	*p value
Mucosal samples					Fecal samples
Order	Flavobacteriales	– 0.4366	1.93–05	0.0005	Cardiobacteriales	– 0.4882	0.0001	0.01
Order	Micrococcales	1.0333	0.018	0.253	Methanobacteriales	– 1.3944	0.0004	0.02
Family	Flavobacteriaceae	– 0.3014	8.11–08	0.219	Leuconostocaceae	– 2.9810	4.20–05	0.003
Family	Clostridiaceae	– 1.0072	0.008	0.274	Cardiobacteriaceae	– 0.4851	0.0002	0.010
Family	Lactobacillaceae	– 0.0115	0.017	0.274	Planctomycetaceae	1.5023	0.0003	0.013
Family	Micrococcaceae	0.9708	0.022	0.219	Methanobacteriaceae	– 1.2405	0.0004	0.014
Genus	Clostridium	– 0.9103	0.011	0.486	Tannerella	– 2.6849	4.81–08	1.17–05
Genus	Lactobacillus	0.0586	0.015	0.486	Citrobacter	– 2.4701	7.65–05	0.003
Genus	Subdoligranulum	0.8853	0.021	0.486	Methanobrevibacter	– 1.4565	0.0007	0.017
Genus	Kocuria	0.7998	0.036	0.634	Kocuria	1.7515	9.25–05	0.003

*p-value adjusted for false discovery rate