TABLE 3.
Expression profiles of unknown DNA regions of B. subtilis JH642 when grown under anaerobic conditionsa
| Gene | Similar protein or gene | Induction or repression (fold)
|
|||
|---|---|---|---|---|---|
| Nitrate respiration | Nitrite respiration | Fermentation
|
|||
| −Pyruvate | +Pyruvate | ||||
| ydjL | Sorbitol or 2,3-butanediol dehydrogenase | 7.7 | 11.6 | 23.2 | 8.4 |
| yolI | Thioredoxin | 16.1 | 13.6 | 5.0 | 10.3 |
| yolJ | PlnO of Lactobacillus plantarum | 14.8 | 12.5 | 5.0 | 9.5 |
| yolK | Disulfide bond oxidoreductase | 6.1 | 5.0 | 2.3 | 3.6 |
| yclJ | Response regulator | 2.0 | 4.2 | 11.7 | 4.2 |
| yclK | Sensor histidine kinase | 2.5 | 5.0 | 13.7 | 5.0 |
| yxaK | 7.5 | 7.5 | 8.6 | 13.9 | |
| yxaL | 16.0 | 15.8 | 18.8 | 19.5 | |
| yfmQ | 8.4 | 11.3 | 15.2 | 5.8 | |
| yncM | 4.0 | 6.4 | 21.5 | 7.4 | |
| ytkA | 6.6 | 12.7 | 16.6 | 10.5 | |
| ywfI | 4.6 | 7.8 | 13.0 | 5.6 | |
| ydhE | Macrolide glycosyltransferase | 4.0 | 3.4 | 7.9 | 2.7 |
| yxjG | 1.9 | 5.2 | 8.2 | 3.5 | |
| ywcJ | Putative formate or nitrite transporter | 2.4 | 6.7 | 52.7 | 7.6 |
| yumD | 1.1 | 3.6 | 30.2 | 1.1 | |
| ywiD | 11.6 | 8.6 | 7.0 | 1.8 | |
| ywiC | 8.0 | 7.6 | 5.2 | 3.1 | |
| yvyD | 3.8 | 5.6 | 6.4 | 4.8 | |
| yvaW | 5.4 | 7.0 | 4.5 | 20.6 | |
| yvaX | 5.8 | 7.7 | 4.8 | 17.1 | |
| yvaY | 8.9 | 8.1 | 5.3 | 24.0 | |
| ysfC | Flavoprotein of glycolate oxidase subunit (GlcD) and d-lactate dehydrogenase (cytochrome) | 11.7 | 24.8 | 19.8 | 1.2 |
| ysfD | [Fe-S] protein | 7.0 | 14.5 | 11.3 | 1.0 |
| yjdD | Fructose phosphotransferase system enzyme II | 5.2 | 4.8 | (3.6) | 3.9 |
| yjdE | Mannose-6-phosphate isomerase | 5.4 | 4.7 | (3.1) | 3.7 |
| yjdF | 2.8 | 2.8 | (1.7) | 1.7 | |
| ykuN | Flavodoxin | 2.2 | 19.5 | (1.8) | 0.8 |
| ykuO | 1.8 | 20.0 | (3.6) | 1.0 | |
| ykuP | Flavodoxin | 2.0 | 18.1 | (2.4) | 0.9 |
| yukM | Antibiotic synthetase | 2.4 | 34.2 | 1.0 | 0.8 |
| yukL | Antibiotic synthetase | 1.5 | 8.4 | 0.9 | 0.8 |
| yvfV | [Fe-S] protein | (1.4) | (7.0) | 1.0 | 1.1 |
| yvfW | (1.6) | (8.0) | 1.1 | 1.5 | |
| yvbY | (1.4) | (5.3) | 1.2 | 1.2 | |
| yjlC | Unknown | (7.2) | (7.1) | (9.4) | (3.6) |
| yjlD | NADH dehydrogenase | (6.5) | (5.9) | (6.8) | (3.1) |
| yxxG | (4.4) | (4.7) | (12.7) | (1.2) | |
| yxiF | (4.3) | (4.6) | (11.3) | (1.6) | |
| yxzC | (4.7) | (5.1) | (13.3) | (1.6) | |
| yxiG | (4.5) | (4.2) | (11.6) | (1.6) | |
| yxiH | (3.4) | (4.1) | (7.0) | (1.5) | |
| yxzG | (3.9) | (3.9) | (8.8) | (1.6) | |
| yxiI | (4.1) | (4.1) | (9.9) | (1.6) | |
| yxiJ | (3.1) | (3.9) | (5.9) | (1.5) | |
| yxiK | (3.5) | (4.4) | (7.0) | (1.9) | |
| yxiM | (3.0) | (4.2) | (5.7) | (1.9) | |
| yurY | ABC transporter | (2.5) | (2.6) | (6.7) | (1.7) |
| yurX | (2.6) | (2.5) | (6.9) | (1.9) | |
| yurW | NifS | (2.5) | (2.1) | (6.3) | (1.9) |
| yurV | NifU | (2.6) | (2.2) | (7.5) | (1.5) |
| yurU | (2.3) | (2.0) | (6.0) | (1.8) | |
| yclN | (3.0) | (1.8) | (5.6) | (2.7) | |
| yclO | ABC transporter | (3.8) | (1.2) | (8.9) | (2.3) |
| yclP | Ferrichrome ABC transporter | (3.7) | (1.3) | (10.5) | (2.7) |
| yclQ | (3.5) | (1.2) | (6.4) | (2.7) | |
| yfmC | Ferrichrome ABC transporter | (4.1) | (2.1) | (15.4) | (2.8) |