REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-HA-Biotin, High Affinity (3F10) | Roche | Cat#12158167001; RRID:AB_390915 |
Horseradish peroxidase conjugated Goat anti Rat IgG antibody | Bio-Rad | Cat#5201–2504 |
Anri-Lysophospholipase 1 antibody [EPR3667] | Abcam | Cat#ab91606; RRID:AB_10565192 |
Anti-APEH antibody | Atlas antibodies | Cat#HPA029700; RRID:AB_10599278 |
Anti-Biotin antibody produced in goat | Sigma | Cat#B3640; RRID:AB_258552 |
Bacterial and virus strains | ||
XL10-Gold Ultracompetent cells | Aligent | Cat#200315 |
Biological samples | ||
Anonymized human blood | United Kingdom National Health System Blood and Transplant Special Health Authority | N/A |
Chemicals, peptides, and recombinant proteins | ||
TMT Mass Tagging reagents | Thermo Fisher Scientific | Cat#90308/90309 Lot#RH239931/239932 |
ActivX™ TAMRA-FP Serine Hydrolase Probe | Thermo Fisher Scientific | Cat#88318 |
ActivX™ Azido-FP Serine Hydrolase Probe | Thermo Fisher Scientific | Cat#88316 |
Compound 2 (C2) | Kind gift of Dr Simon Osbourne, LifeArc, SBC Open Innovation Campus, Stevenage | n/a |
Biotin-alkyne | Jena Bioscience | Cat#CLK-1134 |
Tris(2-carboxyethyl)phosphine hydrochloride (TCEP) | Aldrich | Cat#C4706 |
tris[(1-benzyl-1H-1,2,3-triazol-4-yl)methyl]amine (TBTA) | Sigma | Cat#678937 |
Trypsin Gold | Promega | Cat#V5280 |
SalI restriction endonuclease | New England Bioscience | Cat#R0138 |
BglII restriction endonuclease | New England Bioscience | Cat#R0144 |
Phusion® High-Fidelity DNA Polymerase | New England Bioscience | Cat#M0530 |
Geneticin selective Antibiotic G418 Sulphate | Gibco | Cat#11811023 |
ML348 | Sigma | Cat#SML1901 |
ML349 | Sigma | Cat#SML1918 |
AA74-1 | Sigma | Cat#CAY17507 |
P11 | Cayman Chemical | Cat#CAY17507 |
Pyridostigmine bromide (PyBr) | Sigma | Cat#P9797 |
Tri-o-cresyl phosphate (TOCP) | Supelco | Cat#51885 |
JW480 | Sigma | Cat#SML17507 |
TBV-3166 | Sigma | Cat#SML1694 |
132A RNA dye | Kind gift of Prof YT Chang, National University of Singapore | n/a |
Pierce NeutrAvidin Agarose | Thermo Fisher Scientific | Cat#29200 |
Pierce Control Agarose resin | Thermo Fisher Scientific | Cat#26150 |
RMPI-1640 based media supplemented with 0.292 g/L L-glutamine, 25 μg/ml gentamycin and 5% (w/v) Albumax II | Gibco | Cat#04191762A |
Percoll | GE Healthcare Life Science | Cat#17-0891-01 |
Pierce BCA Protein Assay Kit | Thermo Fisher Scientific | Cat#23225 |
Empore Octadecyl C18 47mm Extraction Disks 2215 | Supleco | Cat#66883-U |
pH reversed-phase peptide fractionation kit | Pierce | Cat#84868 |
WR99210 | Jacobus Pharmaceuticals | n/a |
Infusion HD Cloning Kit | ClonTech | Cat#102518 |
DNeasy Blood and Tissue Kit | Qiagen | Cat#69504 |
QIAquick PCR purification kit | Qiagen | Cat#28104 |
SYBR Safe | Thermo Fisher Scientific | Cat#S33102 |
QIAprep Midi Kit | Qiagen | Cat#12943 |
P3 Primary cell 4-D Nucleofector X kit | Lonza | Cat#V4XP-3034 |
Deposited data | ||
Life cycle proteomics data | ProteomeXchange Consortium via PRIDE. http://www.ebi.ac.uk/pride | Project accession PRIDE: PXD035891 |
Experimental models: Cell lines | ||
P. falciparum 3D7 | Professor Mike Blackman, The Francis Crick Instiutue | n/a |
P. falciparum B11 | Professor Mike Blackman, The Francis Crick Instiutue (Perrin et al., 2018) | n/a |
P. falciparum Psta1-cMUT | This paper | n/a |
P. falciparum Psta2-cMUT | This paper | n/a |
P. falciparum abH112-cMUT | This paper | n/a |
P. falciparum abH114-cMUT | This paper | n/a |
Oligonucleotides | ||
Primers for Pf cMUT generation | See Table S2 for list of primers and sequences | |
Recombinant DNA | ||
pT2A-Psta1-cMUT | This paper (adapted from pT2A_FIKK10_cKO gift of Dr M. Treeck, The Francis Crick Institute) | n/a |
pT2A-Psta2-cMUT | This paper (adapted from pT2A_FIKK10_cKO gift of Dr M. Treeck, The Francis Crick Institute) | n/a |
pT2A-ab112-cMUT | This paper (adapted from pT2A_FIKK10_cKO gift of Dr M. Treeck, The Francis Crick Institute) | n/a |
pT2A-ab114-cMUT | This paper (adapted from pT2A_FIKK10_cKO gift of Dr M. Treeck, The Francis Crick Institute) | n/a |
Psta1 synthetic DNA for the generation of pT2A-Psta1-cMUT | GENEWIZ | n/a |
Psta2 synthetic DNA for the generation of pT2A-Psta2-cMUT | GENEWIZ | n/a |
abH112 synthetic DNA for the generation of pT2A-abH112-cMUT | GENEWIZ | n/a |
abH114 synthetic DNA for the generation of pT2A-abH112-cMUT | GENEWIZ | n/a |
Software and algorithms | ||
MaxQuant v1.6.0.1 | Max-Planck-Institute of Biochemistry | https://maxquant.org |
Perseus v1.5.6.0 | Max-Planck-Institute of Biochemistry | https://maxquant.org |
FACSDiva software v8.0.1 | BD biosciences | https://www.bdbiosciences.com/en-ca/products/software/instrument-software/bd-facsdiva-software#Overview |
FlowJo 2006-2015 | FlowJo LLC | https://www.flowjo.com |
Prism v7 | GraphPad | https://www.graphpad.com/ |