Table 4.
Functional enrichment analysis
Only significant data are reported in this table (those with a P value <0.05). All had P values of 0.00, corrected P values of 0.03 and an enrichment score of 3.49.
|
Clade |
COGs function |
Portion occurrence in group |
Portion occurrence outside of group |
Occurrence in group |
Occurrence outside of group |
Gene clusters IDs |
Core in group |
Core |
|---|---|---|---|---|---|---|---|---|
|
C2 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
1 |
0.14 |
13 |
1 |
GC_00001559, GC_00002662 |
TRUE |
FALSE |
|
C2 |
Uncharacterized membrane protein YjiH, contains nucleoside recognition GATE domain |
1 |
0 |
13 |
0 |
GC_00001582 |
TRUE |
FALSE |
|
C2 |
Predicted transposase YdaD |
1 |
0 |
13 |
0 |
GC_00001531, GC_00001547 |
TRUE |
FALSE |
|
C2 |
DNA-binding transcriptional regulator, XRE-family HTH domain |
1 |
0.14 |
13 |
1 |
GC_00001561, GC_00002218, GC_00002755 |
TRUE |
FALSE |
|
C2 |
Uncharacterized membrane protein YczE |
1 |
0.14 |
13 |
1 |
GC_00001541 |
TRUE |
FALSE |
|
C2 |
Protein involved in initiation of plasmid replication |
1 |
0.14 |
13 |
1 |
GC_00001513, GC_00001543, GC_00001550, GC_00001716, GC_00002180, GC_00002518, GC_00002635, GC_00002672 |
TRUE |
FALSE |
|
C2 |
Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC |
1 |
0 |
13 |
0 |
GC_00001567 |
TRUE |
FALSE |
|
C2 |
Phage-related protein, tail component |
0.92 |
0.14 |
12 |
1 |
GC_00000083, GC_00001528, GC_00001843, GC_00002183, GC_00002230, GC_00002339 |
FALSE |
FALSE |
|
C2 |
Predicted epimerase YddE/YHI9, PhzF superfamily |
1 |
0 |
13 |
0 |
GC_00001569 |
TRUE |
FALSE |
|
C2 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain |
1 |
0 |
13 |
0 |
GC_00001573 |
TRUE |
FALSE |
|
C2 |
NADP-dependent 3-hydroxy acid dehydrogenase YdfG |
1 |
0 |
13 |
0 |
GC_00001588 |
TRUE |
FALSE |
|
C2 |
DNA-binding transcriptional regulator, XRE family |
1 |
0 |
13 |
0 |
GC_00001511 |
TRUE |
FALSE |
|
C2 |
Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family |
1 |
0 |
13 |
0 |
GC_00001584 |
TRUE |
FALSE |
|
C1 |
REP element-mobilizing transposase RayT |
1 |
0 |
7 |
0 |
GC_00001768, GC_00002736 |
TRUE |
FALSE |
|
C1 |
ABC-type phosphate transport system, permease component |
1 |
0 |
7 |
0 |
GC_00001724, GC_00001726 |
TRUE |
FALSE |
|
C1 |
Membrane-associated phospholipid phosphatase |
1 |
0 |
7 |
0 |
GC_00001777 |
TRUE |
FALSE |
|
C1 |
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily |
1 |
0 |
7 |
0 |
GC_00001732 |
TRUE |
FALSE |
|
C1 |
Secreted phosphatase, PhoX family |
1 |
0 |
7 |
0 |
GC_00001783 |
TRUE |
FALSE |
|
C1 |
Predicted endonuclease, GIY-YIG superfamily |
1 |
0 |
7 |
0 |
GC_00001627 |
TRUE |
FALSE |
|
C1 |
ABC-type spermidine/putrescine transport system, permease component II |
1 |
0 |
7 |
0 |
GC_00001725 |
TRUE |
FALSE |
|
C1 |
Restriction endonuclease Mrr |
1 |
0 |
7 |
0 |
GC_00001772 |
TRUE |
FALSE |
|
C1 |
ABC-type phosphate transport system, ATPase component |
1 |
0 |
7 |
0 |
GC_00001727 |
TRUE |
FALSE |
|
C1 |
DNA modification methylase |
1 |
0.08 |
7 |
1 |
GC_00001685 |
TRUE |
FALSE |
|
C1 |
Dienelactone hydrolase |
1 |
0 |
7 |
0 |
GC_00001721 |
TRUE |
FALSE |
Colour highlights the genes present in all isolates in one clade but completely absent in the other clade. Two separate colours were used to differentiate those in clade one (red) and those in clade two.(blue).