Table 5.

uspA read mapping results (percentage of gene coverage)

Accession numbers	Gene	Percentage of gene coverage
		57	1343	1470	10 309	1077	1648	608	1227	626	1080	1833	37	687	1592	19	20	628	18
EU430059.1	uspA1	42.9	46.6	72.0	17.6	70.5	49.2	69.9	0.0	0.0	63.5	10.6	26.8	15.4	29.5	41.9	25.1	22.6	48.9
U61725.1		61.8	43.6	93.5	62.8	81.6	59.0	48.6	10.9	14.6	56.2	52.4	63.7	65.8	54.4	58.9	63.5	62.0	61.3
AF113610.1		96.4	79.0	73.3	76.7	69.3	42.8	53.0	9.5	7.6	52.2	48.8	49.1	54.7	42.3	44.9	45.4	45.9	41.1
AF352398.1		55.2	66.7	78.0	41.7	82.8	50.0	46.2	8.0	10.3	55.9	33.4	51.7	62.0	54.2	48.1	51.1	54.1	50.8
AY730666.1	uspA2	62.6	67.1	58.1	48.2	79.9	39.7	24.1	31.2	47.5	39.7	43.0	36.0	59.9	35.6	31.0	30.4	35.2	35.2
AF410950.1		24.9	43.2	30.8	43.5	53.6	34.4	57.9	38.1	31.4	25.9	31.8	39.6	35.6	33.4	32.4	33.1	34.8	32.5
AF352399.1		32.5	33.8	38.7	15.0	39.5	41.2	43.1	34.0	33.5	37.5	30.8	42.3	40.4	34.6	25.9	28.0	38.9	38.7
AF181073.1		99.0	47.9	29.3	36.6	98.4	50.3	37.9	30.0	33.3	33.8	41.9	36.2	33.6	47.0	28.8	28.3	32.8	31.2
AF113609.1		40.7	86.5	34.0	46.9	55.6	49.1	52.2	38.2	39.9	37.8	34.7	49.4	40.7	41.9	35.6	36.9	42.6	40.0
AF181075.1	uspA2H	88.9	75.1	100.0	100.0	83.7	65.0	73.1	24.6	23.7	65.5	66.3	63.1	63.0	80.8	64.6	68.5	75.0	73.4
DQ811779.1		63.8	55.4	71.3	73.8	77.9	54.9	58.4	19.1	26.9	77.5	73.2	63.4	24.9	31.4	33.3	38.6	47.6	31.7
AF410951.1		32.1	38.7	54.2	73.4	36.8	35.0	27.1	10.4	18.0	23.2	19.6	21.9	24.4	25.4	22.3	25.8	23.5	24.7
AF181074.1		29.4	44.9	78.6	54.4	39.1	31.9	23.9	13.7	13.9	20.4	26.7	22.8	24.3	36.6	29.0	31.9	29.6	33.5
AF181075.1		51.4	45.5	68.7	75.8	47.1	32.1	30.0	22.6	21.4	25.8	26.1	27.5	24.1	44.6	37.9	33.6	41.1	40.8