TABLE 4.
Repair genes of D. radiodurans
| E(g) | Length (aa) | Positiona | Gene |
|---|---|---|---|
| 0.76 | 1,015 | 1 1801990− | Excinuclease A (uvrA-1) |
| 0.52 | 921 | 2 197055− | Excinuclease A (uvrA-2) |
| 0.55 | 730 | 1 2272809+ | Excinuclease B (uvrB) |
| 0.57 | 616 | 1 1360069+ | Excinuclease C (uvrC) |
| 0.52 | 744 | 1 1804529+ | DNA helicase II (uvrD) |
| 0.58 | 1,053 | 1 1549685− | Transcription-repair coupling factor (mfd) |
| 0.52 | 325 | 1 1844356+ | UV damage endonuclease; putative (DR1819) |
| 0.56 | 246 | 1 705155+ | Uracil-DNA N-glycosylase (ung) |
| 0.64 | 198 | 1 733545− | G/U mismatch-specific DNA glycosylase (mug) |
| 0.57 | 290 | 1 493975+ | Formamidopyrimidine-DNA glycosylase (mutM) |
| 0.65 | 362 | 1 2283259− | A/G-specific adenine glycosylase (mutY) |
| 0.86 | 224 | 1 291364+ | Endonuclease III (nth-1) |
| 0.79 | 258 | 1 2439683− | Endonuclease III (nth-2) |
| 0.66 | 283 | 1 356790− | Exodeoxyribonuclease III (xthA) |
| 0.54 | 546 | 1 1718755+ | DNA mismatch repair protein MutL (mutL) |
| 0.45 | 765 | 1 1999856− | DNA mismatch repair protein MutS; putative (mutS) |
| 0.58 | 358 | 1 1098030− | recF protein (recF) |
| 0.51 | 563 | 1 1490126+ | DNA repair protein (recN) |
| 0.80 | 219 | 1 202795− | RecR protein (recR) |
| 0.40 | 823 | 1 1295908− | DNA helicase RecQ (recQ) |
| 0.49 | 714 | 1 1922060− | Exodeoxyribonuclease V; subunit RecD; putative |
| 0.71 | 908 | 1 1942746+ | Exonuclease SbcC (sbcC) |
| 0.55 | 415 | 1 1941499+ | Exonuclease SbcD; putative (DR1921) |
| 2.04b | 362 | 1 2337795+ | recA protein (recA) |
| 0.69 | 200 | 1 1281494− | Holliday junction binding protein (ruvA) |
| 1.06 | 332 | 1 609449− | Holliday junction DNA helicase (ruvB) |
| 0.88 | 178 | 1 436818+ | Holliday junction resolvase (ruvC) |
| 0.50 | 783 | 1 1936853+ | DNA helicase RecG (recG) |
| 0.57 | 955 | 1 1732431− | DNA-directed DNA polymerase (polA) |
| 0.61 | 699 | 1 2084844− | DNA ligase (dnlJ) |
| 0.76 | 170 | 1 80637− | MutT/nudix family protein (DR0079) |
| 0.76 | 177 | 1 276905+ | MutT/nudix family protein (DR0274) |
| 0.62 | 322 | 1 324367− | MutT/nudix family protein (DR0329) |
| 0.60 | 249 | 1 555381+ | MutT/nudix family protein (DR0550) |
| 0.73 | 166 | 1 991985− | MutT/nudix family protein (DR0975) |
| 0.94 | 165 | 1 1019945+ | MutT/nudix family protein (DR1007) |
| 0.83 | 158 | 1 1038101+ | MutT/nudix family protein (DR1025) |
| 0.78 | 175 | 1 1807313− | MutT/nudix family protein (DR1776) |
| 0.59 | 171 | 1 2270912+ | MutT/nudix family protein (DR2272) |
| 1.29b | 143 | 1 2354268+ | MutT/nudix family protein (DR2356) |
| 0.59 | 701 | 3 126894+ | Ribonucleoside-diphosphate reductase; alpha (nrdE) |
| 0.58 | 354 | 3 128990+ | Ribonucleoside-diphosphate reductase; beta (nrdF) |
| 0.89 | 140 | 3 126505+ | Ribonucleotide reductase; NrdI family (DRB0107) |
| 0.62 | 219 | 2 379822− | LexA repressor (lexA) |
| 0.87 | 502 | 1 1112934+ | DNA repair protein (radA) |
| 0.52 | 940 | 3 162296+ | ATP-dependent helicase HepA (hepA) |
| 0.61 | 1,066 | 3 78759+ | Extracellular nuclease; putative (DRB0067) |
| 1.02 | 143 | 1 100371+ | Single-stranded DNA binding protein (ssb) |
| 0.65 | 403 | 1 2335883+ | CinA protein (DR2338) |
| 0.83 | 343 | 3 124398+ | Integrase-recombinase XerD; putative (xerD) |
a
Position in the genome is indicated by a chromosome number (1, large chromosome; 2, small chromosome; 3, megaplasmid MP1) followed by position of the translation initiation site and orientation of the gene (+, direct strand; −, complementary strand).
b
Predicted highly expressed.