Table 3.
Number of all differentially expressed (DE) genes in different co-expressed modules.
| Co-expression module | Number of DE genes (%) | Number of downregulated DE genes (%) | Number of upregulated DE genes (%) |
|---|---|---|---|
| Turquoise | 2,509 (86.46) | 1,354 (46.66) | 1,155 (39.80) |
| Blue | 141 (4.86) | 11 (0.38) | 130 (4.48) |
| Brown | 3 (0.10) | 0 (0) | 3 (0.10) |
| Yellow | 2 (0.07) | 0 (0) | 2 (0.07) |
| Green | 52 (1.79) | 0 (0) | 52 (1.79) |
| Red | 81 (2.79) | 31 (1.07) | 50 (1.72) |
| Black | 50 (1.72) | 0 (0) | 50 (1.72) |
| Pink | 2 (0.07) | 0 (0) | 2 (0.07) |
| Magenta | 36 (1.24) | 8 (0.28) | 28 (0.96) |
| Purple | 5 (0.17) | 4 (0.14) | 1 (0.03) |
| Midnight blue | 5 (0.17) | 4 (0.14) | 1 (0.03) |
| Light cyan | 3 (0.10) | 0 (0) | 3 (0.10) |
| Royal blue | 13 (0.45) | 1 (0.03) | 12 (0.41) |
| Total | 2,902 (100.00) | 1,413 (48.69) | 1,489 (51.31) |