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. 2022 Jul 26;62(17):4066–4082. doi: 10.1021/acs.jcim.2c00419

Table 1. Multistep Calculation of the Free Energy of Adsorption of a Single CHP1404 Molecule to the Graphite–Water Interfacea.

step quantity action system CHP1404 ΔG (kcal/mol) scram1404 ΔG (kcal/mol)
1 ΔGapplyconform apply conform. restraint solution +29.58 ± 0.05 +25.38 ± 0.03
2 ΔGapplyorient apply orient. restraintb solution +4.10 +4.10
3 ΔGadsorbrestrained adsorption with restraints graph–soln –69.21 ± 0.61 –47.47 ± 0.18
4 ΔGreleaseorient release orient. restraint graph–soln –0.03 ± 0.00 –4.17 ± 0.01
5 ΔGreleaseconform release conform. restraint graph–soln –0.62 ± 0.04 –8.41 ± 0.48
total ΔGadsorb sum   –36.19 ± 0.70 –30.58 ± 0.69
a

The calculation is also performed for a peptide with the same amino acid composition but a scrambled sequence (scram1404). See Methods and Figure S5 of the SI for more details.

b

Calculated analytically by eq 5.