Antibodies |
|
|
C13orf8/CHAMP1 |
Abnova |
Cat# H00283489-B01P; RRID:AB_1673079 |
Mad2L2/REV7 |
Abcam |
Cat# ab180579; RRID:AB_2890174 |
POGZ |
Bethyl Laboratories |
Cat# A302-509A; RRID:AB_1966082 |
TRIP13 |
Abcam |
Cat# ab128171; RRID:AB_11145670 |
H3 |
Cell Signaling Technology |
Cat# 3638; RRID:AB_1642229 |
GFP |
Cell Signaling Technology |
Cat# 2956; RRID:AB_1196615 |
β-Actin |
Cell Signaling Technology |
Cat# 3700; RRID:AB_2242334 |
RPA2-P-Ser33 |
Fisher Scientific |
Cat# NB100544; RRID:AB_526631 |
RAD51 |
Santa Cruz |
Cat# sc-8349; RRID:AB_2253533 |
GAPDH |
Cell Signaling Technology |
Cat# 5174; RRID:AB_10622025 |
Goat anti-Rat IgG (Alexa Fluor 488) |
Invitrogen |
Cat# A-11006; RRID:AB_2534074 |
Goat anti-Mouse IgG (Alexa Fluor 488) |
Invitrogen |
Cat# A32723; RRID:AB_2633275 |
Chicken anti-mouse IgG (Alexa Fluor 594) Anti-rabbit IgG, HRP-linked |
Invitrogen |
Cat# A-21201; RRID:AB_2535787 |
Flag |
Millipore-Sigma |
F3165; RRID:AB_259529 |
Chemicals, peptides, and recombinant proteins |
|
|
Olaparib |
Selleckchem |
S1060 |
BrdU |
Millipore-Sigma |
B5002 |
Anti-FLAG® M2 Magnetic Beads |
Millipore-Sigma |
M8823 |
GFP-Trap_A |
Chromotek |
Gta-20 |
Critical commercial assays |
|
|
CellTiter-Glo Luminescent Viability Assay |
Promega |
G7570 |
Subcellular protein fractionation kit |
ThermoFisher |
78840 |
Deposited data |
|
|
Raw imaging data |
This paper; Mendeley data |
https://doi.org/10.17632/fkh6v4dw6y.1
|
TCGA Pan-Cancer Atlas Studies’ RNASeq expression data |
TCGA (PMID: 24071849) |
https://www.cbioportal.org/
|
Cancer cell lines’ RNASeq expression data |
Cancer Cell Line Encyclopedia (Ghandi et al., 2019) |
https://depmap.org/portal/
|
Cancer cell lines’ dependency data (CRISPR DepMap Public 19Q4 dataset) |
Broad Institute Cancer Dependency Map (Meyers et al., 2017) |
https://depmap.org/portal/
|
Experimental models: Cell lines |
|
|
293T |
ATCC |
N/A |
U2OS |
ATCC |
N/A |
RPE-1 |
ATCC |
N/A |
HCC1937 |
D’Andrea lab |
N/A |
U2OS-DR-GFP |
D’Andrea lab |
N/A |
U2OS-EJ5 |
D’Andrea lab |
N/A |
Oligonucleotides |
|
|
siCHAMP1-4: CAGGAATCAAGCAGTGATCAA |
Qiagen |
SI00318038 |
siCHAMP1-8: CAGGAACTTCGTAAACCATCA |
Qiagen |
SI04282159 |
SiPOGZ: CCGGGTGTAAGGTCCCTTTAA |
Qiagen |
SI00688583 |
siTRIP13: TTGGGACAGCTTGGTATACGA |
Qiagen |
(Clairmont et al., 2020) |
AllStars Neg. Control siRNA |
Qiagen |
0001027281 |
Recombinant DNA |
|
|
CHAMP1 CRISPR guide RNA 1_pSpCas9 BB-2A-GFP (PX458) |
Genscript |
N/A |
CHAMP1 CRISPR guide RNA 3_pSpCas9 BB-2A-GFP (PX458) |
Genscript |
N/A |
POGZ CRISPR guide RNA 1_pSpCas9 BB-2A-GFP (PX458) |
Genscript |
N/A |
POGZ CRISPR guide RNA 2_pSpCas9 BB-2A-GFP (PX458) |
Genscript |
N/A |
Software and algorithms |
|
|
ImageJ |
U. S. National Institutes of Health |
https://imagej.nih.gov/ij/
|
Graphpad Prism 9 |
Graphpad |
https://www.graphpad.com/
|
R (version 4.0.3) |
R Foundation for Statistical Computing |
https://www.R-project.org/
|
R package survival (version 3.2–10) |
R Foundation for Statistical Computing |
https://CRAN.R-project.org/package=survival
|
R package survminer (version 0.4.9) |
R Foundation for Statistical Computing |
https://CRAN.R-project.org/package=survminer
|
R package edgeR (version 3.32.1) |
Bioconductor |
https://www.bioconductor.org/packages/release/bioc/html/edgeR.html
|
R package ggplot2 (version 3.3.5) |
R Foundation for Statistical Computing |
https://ggplot2.tidyverse.org
|
R package ggpubr (version 0.4.0) |
R Foundation for Statistical Computing |
https://CRAN.R-project.org/package=ggpubr
|
R package ggpmisc (version 0.4.3) |
R Foundation for Statistical Computing |
https://CRAN.R-project.org/package=ggpmisc
|