Skip to main content
. Author manuscript; available in PMC: 2022 Sep 14.
Published in final edited form as: Cell Rep. 2022 Aug 30;40(9):111297. doi: 10.1016/j.celrep.2022.111297

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
C13orf8/CHAMP1 Abnova Cat# H00283489-B01P; RRID:AB_1673079
Mad2L2/REV7 Abcam Cat# ab180579; RRID:AB_2890174
POGZ Bethyl Laboratories Cat# A302-509A; RRID:AB_1966082
TRIP13 Abcam Cat# ab128171; RRID:AB_11145670
H3 Cell Signaling Technology Cat# 3638; RRID:AB_1642229
GFP Cell Signaling Technology Cat# 2956; RRID:AB_1196615
β-Actin Cell Signaling Technology Cat# 3700; RRID:AB_2242334
RPA2-P-Ser33 Fisher Scientific Cat# NB100544; RRID:AB_526631
RAD51 Santa Cruz Cat# sc-8349; RRID:AB_2253533
GAPDH Cell Signaling Technology Cat# 5174; RRID:AB_10622025
Goat anti-Rat IgG (Alexa Fluor 488) Invitrogen Cat# A-11006; RRID:AB_2534074
Goat anti-Mouse IgG (Alexa Fluor 488) Invitrogen Cat# A32723; RRID:AB_2633275
Chicken anti-mouse IgG (Alexa Fluor 594) Anti-rabbit IgG, HRP-linked Invitrogen Cat# A-21201; RRID:AB_2535787
Flag Millipore-Sigma F3165; RRID:AB_259529
Chemicals, peptides, and recombinant proteins
Olaparib Selleckchem S1060
BrdU Millipore-Sigma B5002
Anti-FLAG® M2 Magnetic Beads Millipore-Sigma M8823
GFP-Trap_A Chromotek Gta-20
Critical commercial assays
CellTiter-Glo Luminescent Viability Assay Promega G7570
Subcellular protein fractionation kit ThermoFisher 78840
Deposited data
Raw imaging data This paper; Mendeley data https://doi.org/10.17632/fkh6v4dw6y.1
TCGA Pan-Cancer Atlas Studies’ RNASeq expression data TCGA (PMID: 24071849) https://www.cbioportal.org/
Cancer cell lines’ RNASeq expression data Cancer Cell Line Encyclopedia (Ghandi et al., 2019) https://depmap.org/portal/
Cancer cell lines’ dependency data (CRISPR DepMap Public 19Q4 dataset) Broad Institute Cancer Dependency Map (Meyers et al., 2017) https://depmap.org/portal/
Experimental models: Cell lines
293T ATCC N/A
U2OS ATCC N/A
RPE-1 ATCC N/A
HCC1937 D’Andrea lab N/A
U2OS-DR-GFP D’Andrea lab N/A
U2OS-EJ5 D’Andrea lab N/A
Oligonucleotides
siCHAMP1-4: CAGGAATCAAGCAGTGATCAA Qiagen SI00318038
siCHAMP1-8: CAGGAACTTCGTAAACCATCA Qiagen SI04282159
SiPOGZ: CCGGGTGTAAGGTCCCTTTAA Qiagen SI00688583
siTRIP13: TTGGGACAGCTTGGTATACGA Qiagen (Clairmont et al., 2020)
AllStars Neg. Control siRNA Qiagen 0001027281
Recombinant DNA
CHAMP1 CRISPR guide RNA 1_pSpCas9 BB-2A-GFP (PX458) Genscript N/A
CHAMP1 CRISPR guide RNA 3_pSpCas9 BB-2A-GFP (PX458) Genscript N/A
POGZ CRISPR guide RNA 1_pSpCas9 BB-2A-GFP (PX458) Genscript N/A
POGZ CRISPR guide RNA 2_pSpCas9 BB-2A-GFP (PX458) Genscript N/A
Software and algorithms
ImageJ U. S. National Institutes of Health https://imagej.nih.gov/ij/
Graphpad Prism 9 Graphpad https://www.graphpad.com/
R (version 4.0.3) R Foundation for Statistical Computing https://www.R-project.org/
R package survival (version 3.2–10) R Foundation for Statistical Computing https://CRAN.R-project.org/package=survival
R package survminer (version 0.4.9) R Foundation for Statistical Computing https://CRAN.R-project.org/package=survminer
R package edgeR (version 3.32.1) Bioconductor https://www.bioconductor.org/packages/release/bioc/html/edgeR.html
R package ggplot2 (version 3.3.5) R Foundation for Statistical Computing https://ggplot2.tidyverse.org
R package ggpubr (version 0.4.0) R Foundation for Statistical Computing https://CRAN.R-project.org/package=ggpubr
R package ggpmisc (version 0.4.3) R Foundation for Statistical Computing https://CRAN.R-project.org/package=ggpmisc