TABLE 1.
Detecting positively selected sites (amino acid residuals) by codon substitution models for gp85 of ALV-J using four methodsa
| Clades | No. of positive sites | Locations of positive sites |
|---|---|---|
| 1.1 | 5 | 64, 150, 200, 212, 239 |
| 1.2 | 7 | 61, 75, 143, 168, 189, 197, 241 |
| 1.3 | 27 | 5, 21, 44, 49, 75, 76, 113, 114, 120, 143, 148, 150, 156, 168, 189, 190, 192, 197, 202, 212, 216, 219, 238, 239, 240, 271, 304 |
| 2 | 1 | 192 |
a
Only visualize P-values <0.05 and pp > 0.95 and their close values. Strain HPRS103 was used as the reference strain for aa-sequence alignment and to determine the position of the positive selection sites.