KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-biotin PE clone 1D4-C5 | Biolegend | Cat# 409004; RRID: AB_10641847 |
Anti-biotin | Abcam | Cat# ab53494; RRID: AB_867860 |
Sepharose anti-GFP antibody | Abcam | Cat# ab69314; RRID: AB_1640178 |
Anti-GFP | Thermo Fisher | Cat# A-11122; RRID: AB_221569 |
Anti-rabbit IgG HRP-conjugated | R&D systems | Cat# HAF008; RRID: AB_357235 |
Rat monoclonal anti-mouse Ly6G clone 1A8 | BioXCell | Cat# BE0075-1; RRID: AB_1107721 |
Rat monoclonal IgG2a isotype control clone 2A3 | BioXCell | Cat# BE0089; RRID: AB_1107769 |
Anti-mouse CD45 APC-Cy7 clone 30-F11 | Biolegend | Cat# 103116; RRID: AB_312981 |
Anti-mouse CD11b PE/Dazzle594 Clone M1/70 | Biolegend | Cat# 101256; RRID: AB_2563648 |
Anti-mouse CD11c PE/Cy7 Clone N418 | Biolegend | Cat# 117318; RRID: AB_493568 |
Anti-mouse Ly6C APC Clone HK1.4 | Biolegend | Cat# 128016; RRID: AB_1732076 |
Anti-mouse Ly6G BV421 Clone 1A8 | Biolegend | Cat# 127628; RRID: AB_2562567 |
Anti-mouse F4/80 BV605 Clone BM8 | Biolegend | Cat# 123133; RRID: AB_2562305 |
Anti-mouse Siglec F BB515 Clone E50-2440 | BD Bioscience | Cat# 564514; RRID: AB_2738833 |
Anti-mouse c-Kit BV421 Clone ACK2 | Biolegend | Cat# 135124; RRID: AB_2562237 |
Anti-mouse ICAM FITC Clone YN/1.7.4 | Biolegend | Cat# 116105; RRID: AB_313696 |
Anti-mouse F4/80 PE Clone BM8 | Biolegend | Cat# 123110; RRID: AB_893486 |
Anti-mouse FcεRI PE/Cy7 Clone MAR-1 | Biolegend | Cat# 134318; RRID: AB_10640122 |
Anti-mouse CD11b BV785 Clone M1/70 | Biolegend | Cat# 101243; RRID: AB_2561373 |
Anti-mouse CD11c BV605 Clone N418 | Biolegend | Cat# 117334; RRID: AB_2562415 |
Anti-mouse I-A/I-E BV711 Clone M5/114.15.2 | Biolegend | Cat# 107643; RRID: AB_2565976 |
Anti-mouse Ly6G PE/Cy7 Clone 1A8 | Biolegend | Cat# 127617; RRID: AB_1877262 |
Anti-mouse CD11b PE Clone M1/70 | Biolegend | Cat# 101207; RRID: AB_312790 |
Anti-mouse B220 APC Clone RA3-6B2 | eBioscience | Cat# 17-0452-82; RRID: AB_469395 |
Anti-mouse Ly6G AF700 Clone 1A8 | Biolegend | Cat# 127622; RRID: AB_10643269 |
Anti-mouse CD49b PE Clone DX5 | Biolegend | Cat# 108908; RRID: AB_313415 |
Rabbit anti-mouse BD14 | MyBioSource | Cat# MBS1490249; RRID: AB_2732866 |
Rat anti-mouse Ly6G | Biolegend | Cat# 127602; RRID: AB_1089180 |
Rabbit anti-S. aureus | Abcam | Cat# 20920;RRID: AB_445913 |
Alexa Fluor ® 488 goat anti-rabbit IgG | Thermo Fisher | Cat# A-11008; RRID: AB_143165 |
Alexa Fluor ® 488 goat anti-rat IgG | Thermo Fisher | Cat# A-11006; RRID: AB_2534074 |
Alexa Fluor ® 594 goat anti-rabbit IgG | Thermo Fisher | Cat# A-11012; RRID: AB_2534079 |
Goat anti-mouse IL-1β | R&D systems | Cat# AF-401-NA; RRID: AB_416684 |
Rabbit anti-cleaved-IL-1β | Cell Signaling Technology | Cat# 63124s |
Rabbit anti-goat IgG HRP-conjugated | R&D systems | Cat# HAF017; RRID: AB_562588 |
HRP anti-beta Actin | Abcam | Cat# Ab49900; RRID: AB_867494 |
Bacterial and virus strains | ||
Staphylococcus aureus SF8300 | Binh Diep (UCSF) | N/A |
USA300 | Tammy Kielian (University of Nebraska) | N/A |
Chemicals, peptides, and recombinant proteins | ||
hBD3 | Anaspec | Cat# AS-60741 |
Biotin-hBD3 | Anaspec | N/A |
mBD14 | Wuyuan Lu (University of Maryland Baltimore) | N/A |
mBD3 | Wuyuan Lu (University of Maryland Baltimore) | N/A |
S. aureus derived LTA | Invivogen | Cat# Tlrl-pslta |
Tryptic soy broth | Millipore | Cat# 22092 |
TRIzol reagent | Thermo Fisher | Cat# 15596018 |
Liberase TL | Roche | Cat# 05401054001 |
DNase I | Sigma-Aldrich | Cat# 4536282001 |
Recombinant IL-1β | R&D systems | Cat# 401-ML |
NuPAGE™ LDS Sample Buffer | Thermo Fisher | Cat# NP0007 |
Q-VD-Oph | R&D systems | Cat# OPH001-01M |
YM254890 | Tocris | Cat# 7352 |
SYTOX blue | Thermo Fisher | Cat# S34857 |
SYTOX red | Thermo Fisher | Cat# S34859 |
SYTOX orange | Thermo Fisher | Cat# S11368 |
Critical commercial assays | ||
Mouse Elastase DuoSet ELISA Kit | R&D systems | Cat# DY4517-05 |
Mouse MPO DuoSet ELISA Kit | R&D systems | Cat# DY3667 |
Mouse S100A8/A9 DuoSet ELISA Kit | R&D systems | Cat# DY8596-05 |
Mouse IL-1β DuoSet ELISA Kit | R&D systems | Cat# DY401-05 |
Mouse Cxcl2 DuoSet ELISA Kit | R&D systems | Cat# DY452-05 |
Mouse BD14 ELISA Kit | MyBioSource | Cat# MBS2515829 |
MACS neutrophil isolation kit | Miltenyi Biotec | Cat# 130-097-658 |
RNAscope® Multiplex Fluorescent Detection Kit v2 | ACDBio | Cat# 323110 |
RNAscope® Ly6g probe | ACDBio | Cat# 455701 |
RNAscope® Mrgpra2 probe | ACDBio | Custom-made |
RNeasy Plus Mini kit | Qiagen | Cat# 74034 |
Chemotaxis assay kit | Abcam | Cat# Ab235692 |
Cellular reactive oxygen species detection assay kit | Abcam | Cat# Ab113851 |
Deposited data | ||
RNA-seq data | NCBI GEO | GSE178507 |
Experimental models: Cell lines | ||
Gα15 HEK 293 cells | This study | N/A |
Mrgpra2b-GFP; Gα15 HEK 293 cells | This study | N/A |
MRGPRX3-FLAG; Gα15 HEK 293 cells | This study | N/A |
MRGPRX4-GFP; Gα15 HEK 293 cells | This study | N/A |
Experimental models: Mice | ||
C57BL/6J | Jackson laboratory | Cat# 000664 |
Mrgpra2 dKO | This study | N/A |
K14-cre; Defflox/flox | This study | N/A |
K14-cre | Jackson laboratory | Cat# 018964 |
Oligonucleotides | ||
gRNAs targeting Mrgpra2a/b CAAGTTAGTTTTGGTCAATC, GATCTGATACCCTCTTCTGG, TAAACTGGCTATCTACTTGA, TTATCCAATGCTGGGATAAT | This study | N/A |
Genotyping primers for Mrgpra2 dKO GTCAGCATGATGGTCAC (WT-F), CATAGGGAAGGCCTCATGTCTC (WT-R), CTATGGAGGGATGCTCATTACTG (Mrgpra2 dKO-F), CAAGATCTGACTCCCTCTTCTGG (Mrgpra2 dKO-R) | This study | N/A |
gRNA targeting Defb13 CCAAGCCAATTTCCTGTGCTGCA | This study | N/A |
gRNA targeting Defb40 CCATGGGCATTTCTGAATGTGAC | This study | N/A |
Primers for genotyping Def cluster deletion GATGCAGGTGCCCTGAAATAT (F) CACTGAATAGACCTGACTTCC (R) | This study | N/A |
RT-PCR primer for Mrgpra2 CCTCCTACACAAGCCAGCAA (F) AAGCACAAGTGAAAGATGATGCT | This study | N/A |
RT-PCR primer for Gapdh TGTTCCTACCCCCAATGTGT (F) TGTGAGGGAGATGCTCAGTG (R) | Zambrano et al., 2019 | N/A |
Software and algorithms | ||
FlowJo | BD | https://www.flowjo.com/ |
GraphPad Prism 9 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
ImageJ | NIH | https://fiji.sc/ |
R | R | https://www.r-project.org/ |
QIIME2 | QIIME2 development team | https://qiime2.org/ |
STAR - 2.7.3a | Alexander Dobin | https://github.com/alexdobin/STAR/releases/tag/2.7.9a |
Partek Flow | Partek | https://www.partek.com/ |
Partek GS v7.0 | Partek | https://www.partek.com/ |
Spotfire | TIBCO | https://www.tibco.com/products/tibco-spotfire |