TABLE 1.
General features of the complete genome sequence of Flavobacterium sediminilitoris YSM-43T
| Genomic feature | Value | % of total | Description |
|---|---|---|---|
| Genome size (bp) | 3,913,692 | ||
| DNA GC (%) | 29.38 | ||
| No. of DNA scaffolds | 1 | ||
| Total no. of genes | 3,599 | ||
| No of CDSs | 3,537 | ||
| No of rRNAs | 9 | ||
| No of 16S rRNAs | 3 | ||
| No of 23S rRNAs | 3 | ||
| No of 5S rRNAs | 3 | ||
| No of tRNAs | 50 | ||
| No of ncRNAs | 3 | ||
| No. of genes assigned to COGs | |||
| Total | 2,694 | ||
| M | 275 | 8.94 | Cell wall/membrane/envelope biogenesis |
| E | 190 | 6.18 | Amino acid transport and metabolism |
| J | 176 | 5.72 | Translation, ribosomal structure, and biogenesis |
| K | 162 | 5.27 | Transcription |
| H | 141 | 4.58 | Coenzyme transport and metabolism |
| L | 141 | 4.58 | Replication, recombination, and repair |
| O | 138 | 4.49 | Posttranslational modification, protein turnover, and chaperones |
| C | 131 | 4.26 | Energy production and conversion |
| T | 120 | 3.9 | Signal transduction mechanisms |
| P | 107 | 3.48 | Inorganic ion transport and metabolism |
| I | 86 | 2.8 | Lipid transport and metabolism |
| G | 74 | 2.41 | Carbohydrate transport and metabolism |
| F | 68 | 2.21 | Nucleotide transport and metabolism |
| V | 55 | 1.79 | Defense mechanisms |
| Q | 45 | 1.46 | Secondary metabolite biosynthesis, transport, and catabolism |
| U | 43 | 1.4 | Intracellular trafficking, secretion, and vesicular transport |
| D | 27 | 0.88 | Cell cycle control, cell division, and chromosome partitioning |
| N | 17 | 0.55 | Cell motility |
| W | 3 | 0.1 | Extracellular structures |
| A | 1 | 0.03 | RNA processing and modification |
| B | 1 | 0.03 | Chromatin structure and dynamics |
| Z | 1 | 0.03 | Cytoskeleton |
| S | 692 | 22.5 | Function unknown |
| UCa | 382 | 12.42 | Not in COGs |
UC, uncharacterized.