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. 2022 Sep 2;12:1010625. doi: 10.3389/fcimb.2022.1010625

Table 1.

List of primers used in quantitative PCR (qPCR).

Primer Primer sequence (5’-3’) Target Gene Tm (°C) Length References
rpoA_F GCAAATCTGGCATTGGCCCT rpoA 61.6 195 (Pearson and Mobley, 2008)
rpoA_R TAGGGCGCTCATCTTCTTCCG 61.9
umoC_F CACAAGCCAGCAGTACTTCA umoC 58.1 144 (Aygül et al., 2019)
umoC-R GTGACTCTATCGCGGCTAAA 57.5
flhC_F CGCACATCAGCCTGCAAGT flhC 61.3 90 (Aygül et al., 2019)
flhC_R GCAGGATTGGCGGAAAGTT 58.7
flhD_F TGCCCGTTTCTTTGTAGCAGA flhD 60 148 (Pearson and Mobley, 2008)
flhD_R CCGGTTTGAAGACAGCGAAA 59
flhDC_F CGCACATCAGCCTGCAAGT flhDC 61.2 90 (Wang et al., 2008)
flhDC_R GCAGGATTGGCGGAAAGTT 58
mrpA_F ATTGCGGGCTCTGCATTA mrpA 61 113 This study
mrpA_R GGAATACGTTGAGCACCTGA 61
mrpJ_F AACGTAAAGAGCTGGGTTAT mrpJ 54.3 81 (Aygül et al., 2019)
mrpJ_R GTTCATAGCGAGAAAACTGT 53.6
rcsB_F GCGCTTATTTGCCGAAGGTTT rcsB 60.4 107 (Pearson and Mobley, 2008)
rcsB_R CACCGAGCTTCATCATGGCTG 61.6
rcsD_F TCCGTATCGTACTTCCATACC rcsD 56.4 86 (Aygül et al., 2019)
rcsD_R GGCGAGTTTTGCAGTTATACC 57.6
speB_F GCGGGATCAAGGCAATCAAT speB 68.9 126 (Aygül et al., 2019)
speB_R CTTTACTGTCTTGGATGCTGC 57.2
glnA-F CGCCCAATGGTAAAAGGAGG glnA 59 103 (Aygül et al., 2019)
glnA_R CCACTAAGCCCATCTCTTCCA 59
luxS_F ACGATGAAAACACCCTCTGG luxS 57.8 125 This study
luxS_R CGCATGAAACCCGCAAATAAG 58.8