Table 1.
The GO and KEGG pathways of RNA-Seq.
| Category | Term | FDR | Count | Genes |
|---|---|---|---|---|
| GOTERM_BP_DIRECT | GO:0031295~T cell costimulation | 0.0034 | 5 | SPN, TMIGD2, TNFSF14, CD5, CD3E |
| GOTERM_BP_DIRECT | GO:0006955~immune response | 0.0034 | 12 | CXCL11, TMIGD2, TNFSF14, OAS2, CCL20, CCL5, TNFRSF9, GZMB, XCL1, B2M, LAT, CD244 |
| GOTERM_CC_DIRECT | GO:0009897~external side of plasma membrane | 0.0060 | 9 | SPN, CD200R1, CD8B, CD8A, CD5, TNFRSF9, CD69, CD3E, CD244 |
| GOTERM_CC_DIRECT | GO:0001772~immunological synapse | 0.0072 | 5 | LCK, CD37, CD3E, CORO1A, LAT |
| KEGG_PATHWAY | ssc04060:Cytokine-cytokine receptor interaction | 0.0238 | 11 | CXCL11, TNFSF14, CCL20, CCL5, TNFRSF9, IL2RB, IL21R, ACKR3, IL2RG, IL9R, CXCL16 |
| KEGG_PATHWAY | ssc04660:T cell receptor signaling pathway | 0.0238 | 8 | CD8B, CD8A, LCK, FYN, CD247, FOS, CD3E, LAT |
| KEGG_PATHWAY | ssc04650:Natural killer cell mediated cytotoxicity | 0.0238 | 8 | LCK, SH2D1B, PRF1, GZMB, FYN, CD247, LAT, CD244 |
| KEGG_PATHWAY | ssc05340:Primary immunodeficiency | 0.0451 | 5 | CD8B, CD8A, LCK, IL2RG, CD3E |
| GOTERM_BP_DIRECT | GO:0008360~regulation of cell shape | 0.0481 | 7 | FGR, SEMA4D, SH3KBP1, WIPF3, PLEKHO1, FYN, CORO1A |
| GOTERM_BP_DIRECT | GO:0042127~regulation of cell proliferation | 0.0497 | 8 | FGR, CNN2, CXCL11, NOS2, LCK, TNFRSF9, FYN, SGK1 |