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. Author manuscript; available in PMC: 2023 Aug 1.
Published in final edited form as: Curr Protoc. 2022 Aug;2(8):e498. doi: 10.1002/cpz1.498

Table 1. Comparing technology platforms.

Each broad class of single-cell technology offers advantages and disadvantages in terms of throughput and cost, flexibility to be adapted to different modalities (RNA, ATAC, DNA methylation, etc.), sensitivity, protocol simplicity (often owing to robust commercialized kits), and widespread adoption rate, which expands the existing knowledgebase about the platform and allows for easy comparison with other similar datasets.

Throughput (cost/labor per cell) Flexibility Sensitivity / Max Depth Protocol Simplicity / Accessibility Adoption / Available public datasets
Droplet ++ + ++ +++ +++
Sorted/Plate-based + +++ +++ ++ ++
Microwell ++ ++ ++ + +
Split / Pool +++ ++ ++ ++ ++