Table 5.

Intragenic recombination in PmMSP1 inferred from 35 Thai isolates.

Event no.	Recombination breakpoints				Methods (p value)
	Between positions*		Between blocks		RDP	GENECONV	Bootscan	Maxchi	Chimaera	SiSscan	3Seq
1	2187	2728	VI	VII	4.69 × 10–12	1.07 × 10–9	1.72 × 10–10	7.26 × 10–14	1.93 × 10–14	1.79 × 10–19	2.03 × 10–21
2	2192	2841	VI	VII	3.02 × 10–4	4.76 × 10–3	NS	2.26 × 10–5	1.66 × 10–6	4.72 × 10–11	5.47 × 10–4
3	706	4684	IV	IX	NS	4.47 × 10–5	9.81 × 10–6	5.22 × 10–5	2.39 × 10–5	6.55 × 10–5	1.90 × 10–9
4	1556	4190	V	IX	NS	1.51 × 10–3	1.15 × 10–4	9.31 × 10–5	NS	9.78 × 10–5	1.19 × 10–8
5	2192	2353	VI	VI	4.47 × 10–4	NS	NS	3.65 × 10–4	5.06 × 10–5	8.60 × 10–5	8.78 × 10–8
6	1361	2979	V	VIII	1.87 × 10–7	6.47 × 10–6	NS	NS	NS	NS	NS
7	2146	2192	VI	VI	NS	0.02319	NS	6.99 × 10–7	9.12 × 10–3	NS	NS
8	2467	3057	VI	VIII	6.45 × 10–5	2.38 × 10–5	4.07 × 10–6	5.40 × 10–3	4.42 × 10–3	NS	2.97 × 10–7
9	2377	2462	VI	VI	NS	3.89 × 10–5	7.90 × 10–6	NS	NS	NS	9.50 × 10–5
10	2303	2369	VI	VI	NS	NS	NS	9.83 × 10–4	2.78 × 10–3	NS	1.08 × 10–5
11	644	1599	IV	V	NS	NS	NS	4.60 × 10–3	NS	NS	1.44 × 10–5
12	2482	2869	VII	VII	NS	6.08 × 10–3	2.19 × 10–3	NS	NS	NS	8.02 × 10–5
13	797	1844	V	V	NS	1.98 × 10–2	5.39 × 10–3	NS	NS	NS	8.63 × 10–4
14	2294	2466	VI	VI	NS	NS	NS	NS	NS	1.82 × 10–13	1.59 × 10–3
15	644	2147	IV	VI	NS	NS	NS	1.48 × 10–2	NS	NS	2.18 × 10–3
16	2197	2302	VI	VI	NS	NS	NS	NS	NS	NS	2.62 × 10–3
17	2212	2328	VI	VI	NS	NS	NS	NS	NS	NS	5.35 × 10–3
18	1847	2185	V	VI	8.05 × 10–3	NS	NS	NS	NS	NS	1.35 × 10–2
19	2357	2840	VI	VII	NS	NS	NS	NS	NS	NS	1.35 × 10–2
20	2172	2213	VI	VI	NS	NS	NS	2.18 × 10–3	NS	NS	2.63 × 10–2
21	644	1599	IV	V	NS	NS	NS	NS	NS	NS	2.73 × 10–2

*Positions after the FJ824669 sequence.