Table 2.

Predictive accuracy when using all or only gene-based markers

Prediction scenario	Traita	Markers	Bayes C				RKHS
			SNPS	MITE/DTX	RLX/RIX	ALL	SNPS	MITE/DTX	RLX/RIX	ALL
Across	GL	Genic	0.57	0.51	0.41	0.67*	0.47	0.54	0.26	0.48
		All	0.65	0.42	0.42	0.66	0.45	0.50	0.35	0.48
	TF	Genic	0.71	0.58	0.50	0.68	0.71	0.65	0.69	0.75*
		All	0.71	0.66	0.56	0.71	0.68	0.72	0.67	0.73
Within	GL	Genic	0.56	0.55	0.43	0.57	0.56	0.38	0.36	0.55
		All	0.61	0.69*	0.43	0.63	0.59	0.50	0.45	0.59
	TF	Genic	0.59	0.55	0.51	0.62	0.57	0.61	0.56	0.57
		All	0.59	0.63*	0.62	0.60	0.59	0.65	0.59	0.60

*Best strategy

^aGL: grain length; TF: time to flowering