Figure 7.
(A) Structural alignment of AlphaFold2 prediction for gabP/0878 (blue) with the predicted structure of the B. subtilis GabP permease (yellow). (B) FATCAT structural alignment of the predicted structure of yloU/0421 from JCVI-syn3A (blue) with the AlphaFold2 predicted structure for B. subtilis YloU fatty acid regulatory protein (yellow). (C) The genomic context in which yloU is found, adjacent to the fatty acid processing genes fakA and plsX, is conserved for gene yloU/0421 in JCVI-syn3A and has been observed to be conserved previously in the Firmicutes.91 (D) FATCAT structural alignment of predicted structure for gene yidC/0908 and predicted structure for M. pneumoniae show significant structural similarity.