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. 2022 Aug 30;89(1):1–12. doi: 10.3233/JAD-220025

Table 1.

Summary of PRS Tools. Summary of PRS tools mentioned in this review, with required platform and input needed for analysis. ISC, International Schizophrenia Consortium; GCTB, genome-wide complex trait Bayesian analyses; LD, linkage disequilibrium; G/P, genotype/phenotype

Tool Authors Development Year Platform Input Requirements Approach
P+T/C+T ISC [56] 2009 PLINK Base phenotype GWAS results Target G/P data C+T
PRSice Euesden et al. [41] 2015 R Base phenotype GWAS results Target G/P data C+T
LDpred Vilhjálmsson et al. [44] 2015 R Genetic architecture prior GWAS summary statistics LD reference panel Target G/P data Bayesian (Gibbs Sampler)
PRS-CS Ge et al. [45] 2019 Python GWAS summary stats LD reference panel Target G/P data Bayesian (Continuous Shrinkage)
SBayesR Lloyd-Jones et al. [46] 2019 GCTB GWAS summary stats LD reference panel Target G/P data Bayesian (Gibbs Sampler)