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. 2022 Aug 31;11(9):2989–3003. doi: 10.1021/acssynbio.2c00164

Table 2. Plasmids Used and Created in This Study (All Plasmid Files are Available as .gbk in the Supporting Information).

name relevant features parental plasmid reference
pSIM5 λ red expression vector, pSC101 ori, repAts, TetR   (64)
pBAD modified pBAD-TOPO, AmpR   (65)
pSL0001 RybB seed region acceptor vector for PBAD expression, AmpR pBAD this work
pSL0002 seed and scaffold-acceptor vector for PBAD expression, AmpR pSL0001 this work
pSL0003 empty control vector with PBAD, KanR pSL0001 this work
pSL0004 RybB seed region acceptor vector for PBAD expression, KanR pSL0002 this work
pSL0005 seed and scaffold-acceptor vector for PBAD expression, KanR pSL0002 this work
pSL0006 empty control vector, AmpR pSL0001 this work
pSL0007 promoter and seed region acceptor vector, AmpR pSL0006 this work
pSL0008 promoter, seed, and scaffold-acceptor vector, AmpR pSL0006 this work
pSL0009 empty control vector, KanR pSL0003 this work
pSL0010 promoter and seed region acceptor vector, KanR pSL0009 this work
pSL0011 promoter, seed, and scaffold-acceptor vector, KanR pSL0009 this work
pSL0137 derivative of pSL0011, SapI recognition sites instead of BbsI, KanR pSL0011 this work
pSLcol_01 pSL0004 with various seeds (Table S1), KanR pSL0004 this work
p-PL PLlacO-1, KanR pSL0137 this work
p-PL-RybB-s8 RybB-s8 expression from PLlacO-1, KanR pSL0010 this work
p-PL-RybB-s38 RybB-s38 expression from PLlacO-1, KanR pSL0010 this work
p-PL-RybB-wt wild-type RybB expression from PLlacO-1, KanR pSL0010 this work
p-PL-RybB-Δseed RybB scaffold expression from PLlacO-1, KanR pSL0010 this work
p-PL-MicA-s8 MicA-s8 expression from PLlacO-1, KanR pSL0011 this work
p-PL-MicA-Δseed MicA scaffold expression from PLlacO-1, KanR pSL0011 this work
p-PL-MicF-s8 MicF-s8 expression from PLlacO-1, KanR pSL0011 this work
p-PL-MicF-Δseed MicF scaffold expression from PLlacO-1, KanR pSL0011 this work
p-PL-OmrB-s8 OmrB-s8 expression from PLlacO-1, KanR pSL0011 this work
p-PL-OmrB-Δseed OmrB scaffold expression from PLlacO-1, KanR pSL0011 this work
p-PL-RybB-s28 RybB-s28 expression from PLlacO-1, KanR pSL0010 this work
p-PL-RybB-s8-PL-RybB-s28 RybB-s8 and RybB-s28 expression from PLlacO-1, KanR pSL0011 this work
p-PL-RybB-s8-PJ-RybB-s28 RybB-s8 and RybB-s28 expression from PLlacO-1 and PBBa_J23119, respectively, KanR pSL0011 this work
p-PL-RybB-s8-PL-MicA-s28 RybB-s8 and MicA-s28 expression from PLlacO-1, KanR pSL0011 this work
p-PL-RybB-s8- PJ-MicA-s28 RybB-s8 and MicA-s28 expression from PLlacO-1 and PBBa_J23119, respectively, KanR pSL0011 this work