Figure 5.

Analysis to assess reproducibility of the DS analysis methods. Spearman’s correlation between P-value lists. Spearman’s correlation could not be calculated for Seurat_LR_latent because all its P-values were constant. Seurat_poisson_latent crashed during the DS analysis runs. Each violin plot includes correlation values between all pairs (with symmetrical pairs excluded) of the 100 subsets of the Liu data. The subsets were generated by sampling replicates without replacement from the data set that consists of 10 replicates per condition and 20 000 cells.