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. Author manuscript; available in PMC: 2023 Sep 20.
Published in final edited form as: Biochemistry. 2022 Aug 29;61(18):2014–2024. doi: 10.1021/acs.biochem.2c00335

Table 1.

Data Collection and Refinement Statistics

Unit Cell
Space group P21
a, b, c (Å) 90.6, 195, 101.4
α, β, γ (deg) 90, 106.2, 90
Data Collection
Wavelength (Å) 0.979
Resolution (Å) 97.3 – 2.6 (2.7 – 2.6)
Total/unique no. of reflections 197,549/99,760
R merge a,b 0.093 (0.479)
R pim a,c 0.032 (0.096)
CC1/2a,d 0.983 (0.474)
I/σ(I) a 18.7 (9.4)
Redundancya 2.0 (2.0)
Completeness (%)a 98.9 (95.8)
Refinement
No. of reflections used in refinement/test set 99,684 (9,635)
R work e 0.208 (0.274)
R free f 0.243 (0.311)
No. of protein chains 8
No. of non-hydrogen atoms 22,284
Average B factor (Å2) 49.3
 macromolecules 49.3
 ligands 55.7
RMSD from ideal geometry
 bonds (Å) 0.006
 angles (deg) 1.16
Ramachandran plot (%)g
 favored 95.6
 allowed 3.8
 outliers 0.5
PDB entry 8D7F
a

Values in parentheses refer to the highest-resolution shell of the data.

b

Rmerge = ∑|Ih − ⟨Ih⟩|/∑⟨Ih⟩; Ih = intensity measure for reflection h; ⟨Ih⟩ = average intensity for reflection h calculated from replicate data.

c

Rpim = ∑(1/(n − 1)1/2∑|Ih − ⟨Ih⟩|/∑⟨Ih⟩; n = number of observations (redundancy).

d

CC1/2=στ2/στ2+σε2 where στ2 is the true measurement error variance and σε2 is the independent measurement error variance.

e

Rwork = ∑||Fo| − |Fc||/∑|Fo| for reflections contained in the working set. |Fo| and |Fc| are the observed and calculated structure factor amplitudes, respectively.

f

Rfree = ∑||Fo| − |Fc||/∑|Fo| for reflections contained in the test set held aside during refinement.

g

Assessed by MolProbity.