Table 1.
Unit Cell | |
Space group | P21 |
a, b, c (Å) | 90.6, 195, 101.4 |
α, β, γ (deg) | 90, 106.2, 90 |
Data Collection | |
Wavelength (Å) | 0.979 |
Resolution (Å) | 97.3 – 2.6 (2.7 – 2.6) |
Total/unique no. of reflections | 197,549/99,760 |
R merge a,b | 0.093 (0.479) |
R pim a,c | 0.032 (0.096) |
CC1/2a,d | 0.983 (0.474) |
I/σ(I) a | 18.7 (9.4) |
Redundancya | 2.0 (2.0) |
Completeness (%)a | 98.9 (95.8) |
Refinement | |
No. of reflections used in refinement/test set | 99,684 (9,635) |
R work e | 0.208 (0.274) |
R free f | 0.243 (0.311) |
No. of protein chains | 8 |
No. of non-hydrogen atoms | 22,284 |
Average B factor (Å2) | 49.3 |
macromolecules | 49.3 |
ligands | 55.7 |
RMSD from ideal geometry | |
bonds (Å) | 0.006 |
angles (deg) | 1.16 |
Ramachandran plot (%)g | |
favored | 95.6 |
allowed | 3.8 |
outliers | 0.5 |
PDB entry | 8D7F |
Values in parentheses refer to the highest-resolution shell of the data.
Rmerge = ∑|Ih − ⟨Ih⟩|/∑⟨Ih⟩; Ih = intensity measure for reflection h; ⟨Ih⟩ = average intensity for reflection h calculated from replicate data.
Rpim = ∑(1/(n − 1)1/2∑|Ih − ⟨Ih⟩|/∑⟨Ih⟩; n = number of observations (redundancy).
where is the true measurement error variance and is the independent measurement error variance.
Rwork = ∑||Fo| − |Fc||/∑|Fo| for reflections contained in the working set. |Fo| and |Fc| are the observed and calculated structure factor amplitudes, respectively.
Rfree = ∑||Fo| − |Fc||/∑|Fo| for reflections contained in the test set held aside during refinement.
Assessed by MolProbity.