Chemicals, peptides, and recombinant proteins |
Power SYBR Green Master Mix |
Applied Biosystems |
Cat# 43-679-59 |
Critical commercial assays |
FGF21 ELISA |
R&D Systems |
Cat# MF2100 |
Adiponectin ELISA |
ALPCO |
Cat# 47-ADPMS-E01 |
Triglyceride Quantification Kit |
Millipore Sigma |
Cat# TRO100-1KT |
Cholesterol Quantification Kit |
BioVision |
Cat# K603-100 |
Milliplex metabolic hormone multiple assay |
Millipore |
Cat# MMHMAG-44K |
Deposited data |
Hepatic RNA seq data |
NIH SRA Database |
PRJNA851959 |
Experimental models: Organisms/strains |
Mouse strain: B6D2/F1 |
The Jackson Laboratory |
Cat# 100006 |
Mouse strain: ATF4 flox |
Chris Adams |
Atf4tm1.1Cmad
|
Mouse strain: C57BL6/J |
The Jackson Laboratory |
Cat# 000664 |
Mouse strain: Albumin-Cre |
The Jackson Laboratory |
Cat# 003574 |
Oligonucleotides – see also Table S4
|
18s: F: CATGCAGAACCCACGACAGTA |
This paper |
N/A |
18s: R: CCTCACGCAGCTTGTTGTCTA |
This paper |
N/A |
Asns: F: GTCAAGAACTCCTGGTTCAAG |
This paper |
N/A |
Asns: R: GATCTGACGGTAGAAGTAGC |
This paper |
N/A |
Atf4: F: TCGATGCTCTGTTTCGAATG |
This paper |
N/A |
Atf4: R: AGAATGTAAAGGGGGCAACC |
This paper |
N/A |
Fgf21: F: CTGCTGGGGGTCTACCAAG |
This paper |
N/A |
Fgf21: R: CTGCGCCTACCACTGTTCC |
This paper |
N/A |
Psat1: F: CAGTGGAGCGCCAGAATAGAA |
This paper |
N/A |
Psat1: R: CCTGTGCCCCTTCAAGGAG |
This paper |
N/A |
Software and algorithms |
R (4.0.2) |
N/A |
N/A |
QIIME 2 (2020.2) |
(Bolyen et al., 2019) |
N/A |
phyloseq (1.32.0) |
(McMurdie and Holmes 2013) |
N/A |
qiime2R (0.99.34) |
N/A |
https://github.com/jbisanz/qiime2R
|
DEseq2 (1.28.1) |
(Love et al., 2014) |
N/A |
Rsubread (2.3.7) |
(Liao et al., 2019) |
N/A |
edgeR (3.30.3) |
(Robinson et al., 2010) |
N/A |
clusterProfiler (3.16.0) |
(Yu et al., 2012) |
N/A |
IsoCorrectoRGUI |
(Heinrich et al., 2018) |
N/A |
Other |
Normal maintenance mouse chow |
Purina |
Cat# 5053 |
Protein-free base diet |
Research Diets |
Cat# D12450BSpx |