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. Author manuscript; available in PMC: 2022 Sep 21.
Published in final edited form as: Cell Rep. 2022 Aug 16;40(7):111187. doi: 10.1016/j.celrep.2022.111187

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides, and recombinant proteins
Power SYBR Green Master Mix Applied Biosystems Cat# 43-679-59
Critical commercial assays
FGF21 ELISA R&D Systems Cat# MF2100
Adiponectin ELISA ALPCO Cat# 47-ADPMS-E01
Triglyceride Quantification Kit Millipore Sigma Cat# TRO100-1KT
Cholesterol Quantification Kit BioVision Cat# K603-100
Milliplex metabolic hormone multiple assay Millipore Cat# MMHMAG-44K
Deposited data
Hepatic RNA seq data NIH SRA Database PRJNA851959
Experimental models: Organisms/strains
Mouse strain: B6D2/F1 The Jackson Laboratory Cat# 100006
Mouse strain: ATF4 flox Chris Adams Atf4tm1.1Cmad
Mouse strain: C57BL6/J The Jackson Laboratory Cat# 000664
Mouse strain: Albumin-Cre The Jackson Laboratory Cat# 003574
Oligonucleotides – see also Table S4
18s: F: CATGCAGAACCCACGACAGTA This paper N/A
18s: R: CCTCACGCAGCTTGTTGTCTA This paper N/A
Asns: F: GTCAAGAACTCCTGGTTCAAG This paper N/A
Asns: R: GATCTGACGGTAGAAGTAGC This paper N/A
Atf4: F: TCGATGCTCTGTTTCGAATG This paper N/A
Atf4: R: AGAATGTAAAGGGGGCAACC This paper N/A
Fgf21: F: CTGCTGGGGGTCTACCAAG This paper N/A
Fgf21: R: CTGCGCCTACCACTGTTCC This paper N/A
Psat1: F: CAGTGGAGCGCCAGAATAGAA This paper N/A
Psat1: R: CCTGTGCCCCTTCAAGGAG This paper N/A
Software and algorithms
R (4.0.2) N/A N/A
QIIME 2 (2020.2) (Bolyen et al., 2019) N/A
phyloseq (1.32.0) (McMurdie and Holmes 2013) N/A
qiime2R (0.99.34) N/A https://github.com/jbisanz/qiime2R
DEseq2 (1.28.1) (Love et al., 2014) N/A
Rsubread (2.3.7) (Liao et al., 2019) N/A
edgeR (3.30.3) (Robinson et al., 2010) N/A
clusterProfiler (3.16.0) (Yu et al., 2012) N/A
IsoCorrectoRGUI (Heinrich et al., 2018) N/A
Other
Normal maintenance mouse chow Purina Cat# 5053
Protein-free base diet Research Diets Cat# D12450BSpx